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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.424467 (36 seq.)
>A171000779
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2470285
2470355
+
Gly
TCC
-
¡û
>A171002615
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1041475
1041545
+
Gly
TCC
-
¡û
>A171005805
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2645649
2645719
+
Gly
TCC
-
¡û
>A171006901
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
138646
138574
-
Gly
TCC
-
¡û
>WENV180318530
OBKM01001582
[OBKM] metagenome; water
71
1
-
Gly
TCC
[ENA]
¢þ
>WENV180318643
OBKM01003444
[OBKM] metagenome; water
4474
4545
+
Gly
TCC
[ENA]
¢þ
>WENV180318755
OBKM01008295
[OBKM] metagenome; water
1934
2005
+
Gly
TCC
[ENA]
¢þ
>WENV180318898
OBKM01033296
[OBKM] metagenome; water
137
67
-
Gly
TCC
[ENA]
¢þ
>WENV170008981
APHM01017571
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
709
780
+
Gly
TCC
[ENA]
¢þ
>At0772
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
475693
475623
-
Gly
TCC
[Ensembl]
¡û
>At1697
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
1496540
1496610
+
Gly
TCC
[Ensembl]
¡û
>WENV170659858
JXWS01011008
[JXWS] soil metagenome; rice field; elevated CO2
813
883
+
Gly
TCC
[ENA]
¢þ
>WENV170659971
JXWS01063201
[JXWS] soil metagenome; rice field; elevated CO2
454
383
-
Gly
TCC
[ENA]
¢þ
>WENV170681525
LFFM01001208
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
78
8
-
Gly
TCC
[ENA]
¢þ
>WENV170681717
LFFM01002272
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5653
5724
+
Gly
TCC
[ENA]
¢þ
>WENV170701912
LKMJ01000106
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
17960
18030
+
Gly
TCC
[ENA]
¢þ
>WENV170702047
LKMJ01000390
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
20023
20094
+
Gly
TCC
[ENA]
¢þ
>WENV170702085
LKMJ01000497
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18234
18304
+
Gly
TCC
[ENA]
¢þ
>W1910175097
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
591226
591156
-
Gly
TCC
[ENA]
¡û
>W1910226714
FNBK01000001
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
318253
318323
+
Gly
TCC
[ENA]
¡û
>W1910228395
FNOF01000010
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
44696
44766
+
Gly
TCC
[ENA]
¡û
>W1910229697
FOCX01000008
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
162831
162903
+
Gly
TCC
[ENA]
¡û
>W1910583064
JXAO01000078
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
568
638
+
Gly
TCC
[ENA]
¡û
>W1910617607
LIUF01000004
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
27305
27233
-
Gly
TCC
[ENA]
¡û
>W1911696830
QNGA01000004
Euryarchaeota
halophilic archaeon H22 [QNGA]
254540
254611
+
Gly
TCC
[ENA]
¡û
>W1911709465
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
788129
788199
+
Gly
TCC
[ENA]
¡û
>W1911709607
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
96847
96777
-
Gly
TCC
[ENA]
¡û
>W1911770009
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
75877
75807
-
Gly
TCC
[ENA]
¡û
>W1610000817
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1255538
1255468
-
Gly
TCC
[ENA]
¡û
>W1610014128
AOLQ01000012
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
44600
44670
+
Gly
TCC
[ENA]
¡û
>W1610014192
AOLR01000020
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
15103
15033
-
Gly
TCC
[ENA]
¡û
>W1610014274
AOLW01000017
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
8554
8484
-
Gly
TCC
[ENA]
¡û
>W1610014319
AOLX01000015
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
88558
88488
-
Gly
TCC
[ENA]
¡û
>W1610014396
AOLY01000037
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
235781
235709
-
Gly
TCC
[ENA]
¡û
>W1610061892
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
318069
318139
+
Gly
TCC
[ENA]
¡û
>W1610881035
LRHL01000042
Euryarchaeota
Haloarcula sp. K1 [LRHL]
126103
126173
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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