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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448425 (40 seq.)
>C171064249
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590320
2590394
+
Glu
TTC
-
¡û
>C171064276
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618400
2618474
+
Glu
TTC
-
¡û
>C171064307
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1117627
1117553
-
Glu
TTC
-
¡û
>C171064312
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
716058
715984
-
Glu
TTC
-
¡û
>C171064319
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709760
709686
-
Glu
TTC
-
¡û
>C171064346
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695817
695743
-
Glu
TTC
-
¡û
>C171064358
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689094
689020
-
Glu
TTC
-
¡û
>WENV180043055
LQAH01000736
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
6546
6472
-
Glu
TTC
[ENA]
¢þ
>WENV180043159
LQAH01004718
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
656
582
-
Glu
TTC
[ENA]
¢þ
>WENV180043192
LQAH01009398
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
64
138
+
Glu
TTC
[ENA]
¢þ
>WENV180043241
LQAH01014131
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
684
610
-
Glu
TTC
[ENA]
¢þ
>WENV180043377
LQAH01038377
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
86
160
+
Glu
TTC
[ENA]
¢þ
>WENV180043647
LQAI01004623
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
46
120
+
Glu
TTC
[ENA]
¢þ
>WENV180043654
LQAI01004738
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
143
69
-
Glu
TTC
[ENA]
¢þ
>WENV180043727
LQAI01012482
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
269
343
+
Glu
TTC
[ENA]
¢þ
>WENV180043792
LQAI01020402
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
250
324
+
Glu
TTC
[ENA]
¢þ
>WENV183717509
PDWJ01001031
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3401
3327
-
Glu
TTC
[ENA]
¢þ
>WENV183718699
PDWJ01005943
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9520
9594
+
Glu
TTC
[ENA]
¢þ
>WENV183719217
PDWJ01010849
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6163
6089
-
Glu
TTC
[ENA]
¢þ
>WENV183719800
PDWJ01020617
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
521
594
+
Glu
TTC
[ENA]
¢þ
>WENV183721521
PDWJ01073624
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
912
986
+
Glu
TTC
[ENA]
¢þ
>WENV170635465
JDSF01029499
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
256
182
-
Glu
TTC
[ENA]
¢þ
>WENV170635477
JDSF01031079
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV170674973
LCWZ01000168
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
6586
6512
-
Glu
TTC
[ENA]
¢þ
>WENV170675149
LCWZ01009875
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
809
735
-
Glu
TTC
[ENA]
¢þ
>WENV170675171
LCWZ01011728
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
663
589
-
Glu
TTC
[ENA]
¢þ
>WENV170675206
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
449
523
+
Glu
TTC
[ENA]
¢þ
>WENV170675338
LCWZ01042818
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
345
271
-
Glu
TTC
[ENA]
¢þ
>WENV170695222
LGVE01060758
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
141
67
-
Glu
TTC
[ENA]
¢þ
>WENV170696387
LGVF01016044
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
864
790
-
Glu
TTC
[ENA]
¢þ
>WENV170699105
LGVF01483016
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
828
754
-
Glu
TTC
[ENA]
¢þ
>C151057228
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166904
1166978
+
Glu
TTC
[Ensembl]
¡û
>C151057244
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178360
1178434
+
Glu
TTC
[Ensembl]
¡û
>C151057268
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
4170728
4170654
-
Glu
TTC
[Ensembl]
¡û
>C151057272
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724525
3724451
-
Glu
TTC
[Ensembl]
¡û
>W1710506677
FMUS01000011
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
82126
82052
-
Glu
TTC
[ENA]
¡û
>W1710506682
FMUS01000030
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
648
722
+
Glu
TTC
[ENA]
¡û
>W1710506713
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
78
4
-
Glu
TTC
[ENA]
¡û
>W1710553647
FOHU01000003
Bacillota
Natronincola peptidivorans [FOHU]
325654
325580
-
Glu
TTC
[ENA]
¡û
>W1710600871
FUWV01000016
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
44622
44696
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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