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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454110 (120 seq.)
>W1710805223
LJZW01000001
Gammaproteobacteria
Xylella fastidiosa [LJZW]
124075
124150
+
Thr
GGT
[ENA]
¡û
>W1710808093
LKDK01000028
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
27955
28030
+
Thr
GGT
[ENA]
¡û
>W1710809625
LKES01000003
Gammaproteobacteria
Xylella fastidiosa [LKES]
106339
106414
+
Thr
GGT
[ENA]
¡û
>W1710863634
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
742800
742875
+
Thr
GGT
[ENA]
¡û
>W1711055753
LRVE01000003
Gammaproteobacteria
Xylella fastidiosa [LRVE]
123198
123123
-
Thr
GGT
[ENA]
¡û
>W1711055827
LRVF01000106
Gammaproteobacteria
Xylella fastidiosa [LRVF]
123202
123127
-
Thr
GGT
[ENA]
¡û
>W1711055849
LRVG01000023
Gammaproteobacteria
Xylella fastidiosa [LRVG]
9816
9891
+
Thr
GGT
[ENA]
¡û
>W1711055899
LRVH01000055
Gammaproteobacteria
Xylella fastidiosa [LRVH]
5145
5220
+
Thr
GGT
[ENA]
¡û
>W1711055964
LRVI01000035
Gammaproteobacteria
Xylella fastidiosa [LRVI]
135844
135919
+
Thr
GGT
[ENA]
¡û
>W1711056023
LRVJ01000153
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
175
100
-
Thr
GGT
[ENA]
¡û
>W1711078027
LSMJ01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
288617
288542
-
Thr
GGT
[ENA]
¡û
>W1711134777
LUYA01000005
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
122951
123026
+
Thr
GGT
[ENA]
¡û
>W1711134830
LUYB01000006
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
122850
122925
+
Thr
GGT
[ENA]
¡û
>W1711134860
LUYC01000001
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
192354
192279
-
Thr
GGT
[ENA]
¡û
>W1711386685
MEFQ01000093
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
12011
12086
+
Thr
GGT
[ENA]
¡û
>W1711618075
MPAZ01000006
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
113826
113901
+
Thr
GGT
[ENA]
¡û
>C171002837
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
2106941
2106866
-
Thr
GGT
-
¡û
>C171113966
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
2359448
2359373
-
Thr
GGT
-
¡û
>W131175940
ARJQ01000006
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
992
917
-
Thr
GGT
[ENA]
¡û
>W131221323
AUAJ01000007
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
111629
111704
+
Thr
GGT
[ENA]
¡û
>W131235355
AULN01000010
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
39825
39750
-
Thr
GGT
[ENA]
¡û
>C027164
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
2525616
2525541
-
Thr
GGT
[Ensembl]
¡û
>C027212
AE009442
Gammaproteobacteria
Xylella fastidiosa Temecula1 [AE009442]
2369922
2369847
-
Thr
GGT
[Ensembl]
¡û
>w001678
AAAM03000033
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
27350
27427
+
Thr
GGT
[ENA]
¡û
>w001597
AAAL02000002
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
281658
281581
-
Thr
GGT
[ENA]
¡û
>W141096990
AVGA01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
122
47
-
Thr
GGT
[ENA]
¡û
>WENV181221695
OFCW01001670
[OFCW] microbial mat metagenome; Microbial Mat
706
631
-
Thr
GGT
[ENA]
¢þ
>WENV181221733
OFCY01000001
[OFCY] metagenome; soil
54932
54857
-
Thr
GGT
[ENA]
¢þ
>WENV181221853
OFCZ01000073
[OFCZ] metagenome; soil
13464
13539
+
Thr
GGT
[ENA]
¢þ
>WENV181222435
OFDB01000020
[OFDB] metagenome; soil
12590
12665
+
Thr
GGT
[ENA]
¢þ
>W141148619
AWYH01000050
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
121
46
-
Thr
GGT
[ENA]
¡û
>W141149637
AWZR01000013
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
113402
113477
+
Thr
GGT
[ENA]
¡û
>W141152308
AXBS01000042
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
121
46
-
Thr
GGT
[ENA]
¡û
>W141153663
AXDP01000006
Gammaproteobacteria
Xylella fastidiosa Mul-MD [AXDP]
98582
98657
+
Thr
GGT
[ENA]
¡û
>WENV181732165
OGQD01013788
[OGQD] human gut metagenome; faeces
1778
1703
-
Thr
GGT
[ENA]
¢þ
>W141207719
AZNZ01000012
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
587
512
-
Thr
GGT
[ENA]
¡û
>W141215635
AZUH01000047
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
10500
10575
+
Thr
GGT
[ENA]
¡û
>W141216593
AZUZ01000018
Gammaproteobacteria
Pseudoxanthomonas suwonensis J47 [AZUZ]
83074
83149
+
Thr
GGT
[ENA]
¡û
>W141216679
AZVB01000009
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
153561
153636
+
Thr
GGT
[ENA]
¡û
>C08011556
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
2324348
2324276
-
Thr
GGT
[Ensembl]
¡û
>W141274369
JAAN01000032
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
98900
98825
-
Thr
GGT
[ENA]
¡û
>W141277612
JAES01000051
Gammaproteobacteria
Pseudoxanthomonas suwonensis J43 [JAES]
10299
10374
+
Thr
GGT
[ENA]
¡û
>C08011605
CP001011
Gammaproteobacteria
Xylella fastidiosa M23 [CP001011]
2385701
2385629
-
Thr
GGT
[Ensembl]
¡û
>WENV183726028
PJQF01062577
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
110
185
+
Thr
GGT
[ENA]
¢þ
>WENV183729138
PJTQ01006285
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1764
1839
+
Thr
GGT
[ENA]
¢þ
>WENV183745338
PJUL01027745
[PJUL] feces metagenome; Chicken feces enriched on filter paper
291
216
-
Thr
GGT
[ENA]
¢þ
>WENV183749404
PPFU01165593
[PPFU] hypolithon metagenome; Antarctic Hypolithon
290
365
+
Thr
GGT
[ENA]
¢þ
>WENV170000051
AERA01003563
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
354
429
+
Thr
GGT
[ENA]
¢þ
>WENV170014214
AXCI01001446
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
113
38
-
Thr
GGT
[ENA]
¢þ
>W141401132
JDSQ01000010
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
106088
106163
+
Thr
GGT
[ENA]
¡û
>WENV170646035
JQGF01012194
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
510
585
+
Thr
GGT
[ENA]
¢þ
>WENV170680822
LFEF01024800
[LFEF] freshwater metagenome; waterbloom
1461
1386
-
Thr
GGT
[ENA]
¢þ
>WENV170684470
LFRM01041026
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
519
444
-
Thr
GGT
[ENA]
¢þ
>WENV170717881
LSQX01053036
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3560
3635
+
Thr
GGT
[ENA]
¢þ
>WENV170721173
LSQX01181864
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
177
102
-
Thr
GGT
[ENA]
¢þ
>WENV170965690
MTEV01000232
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
86
161
+
Thr
GGT
[ENA]
¢þ
>WENV170991227
MWWA01139396
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
349
424
+
Thr
GGT
[ENA]
¢þ
>C181007957
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
2527647
2527572
-
Thr
GGT
-
¡û
>C181008011
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
2637149
2637074
-
Thr
GGT
-
¡û
>C181008060
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
2501894
2501819
-
Thr
GGT
-
¡û
>C181008108
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
2596089
2596014
-
Thr
GGT
-
¡û
>C181008157
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
2663761
2663686
-
Thr
GGT
-
¡û
>C181011043
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
2467745
2467670
-
Thr
GGT
-
¡û
>C181020214
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
2359266
2359191
-
Thr
GGT
-
¡û
>C181020263
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
2359462
2359387
-
Thr
GGT
-
¡û
>C181180361
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
312681
312756
+
Thr
GGT
-
¡û
>W141699127
JMHP01000016
Gammaproteobacteria
Xylella fastidiosa [JMHP]
122
47
-
Thr
GGT
[ENA]
¡û
>W1911162525
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
286096
286171
+
Thr
GGT
[ENA]
¡û
>W1911497077
OCND01000004
Gammaproteobacteria
Pseudoxanthomonas wuyuanensis CGMCC 1.10978 [OCND]
271579
271504
-
Thr
GGT
[ENA]
¡û
>W1911582006
PHFP01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8071 [PHFP]
202
127
-
Thr
GGT
[ENA]
¡û
>W1911582058
PHFQ01000005
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7969 [PHFQ]
215
140
-
Thr
GGT
[ENA]
¡û
>W1911582106
PHFR01000007
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP7970 [PHFR]
213
138
-
Thr
GGT
[ENA]
¡û
>W1911582143
PHFS01000005
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
125630
125705
+
Thr
GGT
[ENA]
¡û
>W1911582202
PHFT01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8082 [PHFT]
213
138
-
Thr
GGT
[ENA]
¡û
>W1911582242
PHFU01000006
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa CFBP8351 [PHFU]
124494
124569
+
Thr
GGT
[ENA]
¡û
>W1911582283
PHFV01000006
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
215
140
-
Thr
GGT
[ENA]
¡û
>W1911710212
QPQV01000131
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
126798
126873
+
Thr
GGT
[ENA]
¡û
>W1911710262
QPQW01000141
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
126814
126889
+
Thr
GGT
[ENA]
¡û
>W1911726713
QTJS01000020
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL2055 [QTJS]
42842
42917
+
Thr
GGT
[ENA]
¡û
>W1911726742
QTJT01000004
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa XYL1732 [QTJT]
121
46
-
Thr
GGT
[ENA]
¡û
>W1911752163
QWLC01000105
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa IVIA5235 [QWLC]
279084
279009
-
Thr
GGT
[ENA]
¡û
>SRA1002239
SRR001308.324442
Metagenomic characterization of a wastewater treatment plant (SRP000180)
141
216
+
Thr
GGT
[SRA]
>W1810692781
QLKV01000003
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
114016
113941
-
Thr
GGT
[ENA]
¡û
>W1810914495
QVPD01000013
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
46869
46794
-
Thr
GGT
[ENA]
¡û
>C151011032
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
60621
60546
-
Thr
GGT
[Ensembl]
¡û
>C151011685
CP006740
Gammaproteobacteria
Xylella fastidiosa MUL0034 [CP006740]
2537055
2537130
+
Thr
GGT
[Ensembl]
¡û
>WENV11100409
AERA01003563
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
354
429
+
Thr
GGT
[ENA]
¡û
>W1511320759
JQAP01000015
Gammaproteobacteria
Xylella fastidiosa ATCC 35879 [JQAP]
288180
288105
-
Thr
GGT
[ENA]
¡û
>C11118162
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
2578866
2578791
-
Thr
GGT
[Ensembl]
¡û
>C11123988
CP002165
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa GB514 [CP002165]
970235
970160
-
Thr
GGT
[Ensembl]
¡û
>W1511436672
JUJW01000011
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
17595
17520
-
Thr
GGT
[ENA]
¡û
>W11158549
AFDJ01000012
Gammaproteobacteria
Xylella fastidiosa EB92.1 [AFDJ]
121
46
-
Thr
GGT
[ENA]
¡û
>C161085648
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
3027784
3027709
-
Thr
GGT
[Ensembl]
¡û
>W1610027356
AVPU01000019
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
147
72
-
Thr
GGT
[ENA]
¡û
>W121110747
ALIP01000127
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
45298
45223
-
Thr
GGT
[ENA]
¡û
>W1610207426
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
510279
510204
-
Thr
GGT
[ENA]
¡û
>W1610521535
JNBT01000028
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
127405
127330
-
Thr
GGT
[ENA]
¡û
>W1610547678
JUKH01000017
Gammaproteobacteria
Luteimonas abyssi [JUKH]
113441
113366
-
Thr
GGT
[ENA]
¡û
>W1610587079
LDJL01000029
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
3088
3163
+
Thr
GGT
[ENA]
¡û
>W1610669080
LJZW01000001
Gammaproteobacteria
Xylella fastidiosa [LJZW]
124075
124150
+
Thr
GGT
[ENA]
¡û
>W1610672197
LKDK01000028
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
27955
28030
+
Thr
GGT
[ENA]
¡û
>W1610673731
LKES01000003
Gammaproteobacteria
Xylella fastidiosa [LKES]
106339
106414
+
Thr
GGT
[ENA]
¡û
>W1610725980
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
742800
742875
+
Thr
GGT
[ENA]
¡û
>W1610896799
LRVE01000003
Gammaproteobacteria
Xylella fastidiosa [LRVE]
123198
123123
-
Thr
GGT
[ENA]
¡û
>W1610896873
LRVF01000106
Gammaproteobacteria
Xylella fastidiosa [LRVF]
123202
123127
-
Thr
GGT
[ENA]
¡û
>W1610896895
LRVG01000023
Gammaproteobacteria
Xylella fastidiosa [LRVG]
9816
9891
+
Thr
GGT
[ENA]
¡û
>W1610896945
LRVH01000055
Gammaproteobacteria
Xylella fastidiosa [LRVH]
5145
5220
+
Thr
GGT
[ENA]
¡û
>W1610897010
LRVI01000035
Gammaproteobacteria
Xylella fastidiosa [LRVI]
135844
135919
+
Thr
GGT
[ENA]
¡û
>W1610897069
LRVJ01000153
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
175
100
-
Thr
GGT
[ENA]
¡û
>W1610917043
LSMJ01000011
Gammaproteobacteria
Xylella fastidiosa subsp. fastidiosa [LSMJ]
288617
288542
-
Thr
GGT
[ENA]
¡û
>WENV080003
AATO01000472
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
3404
3481
+
Thr
GGT
[ENA]
>W1710023590
AVPU01000019
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
147
72
-
Thr
GGT
[ENA]
¡û
>W1710208060
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
510279
510204
-
Thr
GGT
[ENA]
¡û
>W1710582994
FQUK01000034
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
22939
23014
+
Thr
GGT
[ENA]
¡û
>W1710585668
FQWN01000006
Gammaproteobacteria
Xylella fastidiosa [FQWN]
216
141
-
Thr
GGT
[ENA]
¡û
>W1710595313
FTLW01000003
Gammaproteobacteria
Lysobacter tolerans [FTLW]
117277
117202
-
Thr
GGT
[ENA]
¡û
>W1710604273
FUZV01000001
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
966667
966592
-
Thr
GGT
[ENA]
¡û
>W1710620820
JNBT01000028
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
127405
127330
-
Thr
GGT
[ENA]
¡û
>W1710650923
JUKH01000017
Gammaproteobacteria
Luteimonas abyssi [JUKH]
113441
113366
-
Thr
GGT
[ENA]
¡û
>W1710706209
LDJL01000029
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
3088
3163
+
Thr
GGT
[ENA]
¡û
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Representative sequence of each cluster
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