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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455575 (43 seq.)
>A171000795
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
870407
870335
-
Gln
CTG
-
¡û
>A171001137
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3859236
3859163
-
Gln
CTG
-
¡û
>A171002447
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
768780
768853
+
Gln
CTG
-
¡û
>A171003115
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1511459
1511386
-
Gln
CTG
-
¡û
>A171003191
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
399708
399635
-
Gln
CTG
-
¡û
>A171003484
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3980658
3980585
-
Gln
CTG
-
¡û
>At0789
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2369936
2369864
-
Gln
CTG
[Ensembl]
¡û
>WENV170680197
LFCJ01005754
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2340
2267
-
Gln
CTG
[ENA]
¢þ
>WENV170681450
LFFM01000938
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
19559
19631
+
Gln
CTG
[ENA]
¢þ
>WENV170681637
LFFM01001783
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
154
82
-
Gln
CTG
[ENA]
¢þ
>WENV170681704
LFFM01002167
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4270
4198
-
Gln
CTG
[ENA]
¢þ
>WENV170682317
LFFM01009078
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1284
1356
+
Gln
CTG
[ENA]
¢þ
>WENV170702398
LKMJ01001709
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5011
4939
-
Gln
CTG
[ENA]
¢þ
>WENV170703570
LKMJ01013831
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6941
7014
+
Gln
CTG
[ENA]
¢þ
>W1920000002
BBJN01000009
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
78596
78523
-
Gln
CTG
[ENA]
¡û
>W1920000118
CVRT01000052
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
63132
63204
+
Gln
CTG
[ENA]
¡û
>W1920000126
FMZP01000006
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
146103
146030
-
Gln
CTG
[ENA]
¡û
>W1920000141
FOIC01000006
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
49340
49413
+
Gln
CTG
[ENA]
¡û
>W1920000144
FOPZ01000024
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
10029
10101
+
Gln
CTG
[ENA]
¡û
>W1920000147
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
177491
177418
-
Gln
CTG
[ENA]
¡û
>W1920000148
FOYN01000001
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
47542
47469
-
Gln
CTG
[ENA]
¡û
>W1920000601
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2433883
2433956
+
Gln
CTG
[ENA]
¡û
>W1920000668
NHPJ01000002
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
1201
1129
-
Gln
CTG
[ENA]
¡û
>W1920001038
QMIM01000018
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
68032
68104
+
Gln
CTG
[ENA]
¡û
>W1910227153
FNLC01000003
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
252151
252078
-
Gln
CTG
[ENA]
¡û
>W1910229346
FNWL01000004
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
163767
163694
-
Gln
CTG
[ENA]
¡û
>W1910229685
FOCX01000003
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
4239
4311
+
Gln
CTG
[ENA]
¡û
>W1910230463
FORO01000062
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
6768
6695
-
Gln
CTG
[ENA]
¡û
>W1911591353
PKKI01000087
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
6237
6164
-
Gln
CTG
[ENA]
¡û
>W1610000803
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2856285
2856357
+
Pseudo
CTG
[ENA]
¡û
>W1610004101
AGIM01000009
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
6853
6926
+
Pseudo
CTG
[ENA]
¡û
>W1610005356
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
303516
303443
-
Pseudo
CTG
[ENA]
¡û
>W1610012170
AOIC01000064
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
6618
6691
+
Pseudo
CTG
[ENA]
¡û
>W1610012344
AOIJ01000052
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
40349
40422
+
Pseudo
CTG
[ENA]
¡û
>W1610014179
AOLR01000010
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
157298
157226
-
Pseudo
CTG
[ENA]
¡û
>W1610014227
AOLS01000062
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
407652
407580
-
Pseudo
CTG
[ENA]
¡û
>W1610014325
AOLX01000022
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
170341
170413
+
Pseudo
CTG
[ENA]
¡û
>W1610014461
AOMA01000070
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
10741
10668
-
Pseudo
CTG
[ENA]
¡û
>W1610018972
AQZY01000005
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
10495
10567
+
Pseudo
CTG
[ENA]
¡û
>W1610682144
LKMK01000128
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
2340
2267
-
Pseudo
CTG
[ENA]
¡û
>W1610682352
LKMU01000010
Euryarchaeota
Halorubrum sp. PL-Br10_E2g5 [LKMU]
5011
4939
-
Pseudo
CTG
[ENA]
¡û
>W1610682423
LKMY01000010
Euryarchaeota
Nanohaloarchaea archaeon PL-Br10_U2g5 [LKMY]
5011
4939
-
Pseudo
CTG
[ENA]
¡û
>W1610779644
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
621079
621007
-
Pseudo
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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