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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455720 (88 seq.)
>W1711326585
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
3734
3659
-
Ala
TGC
[ENA]
¡û
>W1711326595
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
330742
330667
-
Ala
TGC
[ENA]
¡û
>W1711326626
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
507691
507616
-
Ala
TGC
[ENA]
¡û
>W1711326632
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
5752
5677
-
Ala
TGC
[ENA]
¡û
>C171085148
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
541520
541595
+
Ala
TGC
-
¡û
>C171085157
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
1987032
1987107
+
Ala
TGC
-
¡û
>C171085178
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3392121
3392046
-
Ala
TGC
-
¡û
>C171085185
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3122989
3122914
-
Ala
TGC
-
¡û
>W131050716
AMXA01000009
Betaproteobacteria
Thauera sp. 28 [AMXA]
92273
92198
-
Ala
TGC
[ENA]
¡û
>W131050740
AMXA01000095
Betaproteobacteria
Thauera sp. 28 [AMXA]
146
221
+
Ala
TGC
[ENA]
¡û
>W131050792
AMXB01000081
Betaproteobacteria
Thauera sp. 27 [AMXB]
1857
1932
+
Ala
TGC
[ENA]
¡û
>W131050846
AMXC01000063
Betaproteobacteria
Thauera sp. 63 [AMXC]
1849
1924
+
Ala
TGC
[ENA]
¡û
>W131050897
AMXD01000247
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
660
585
-
Ala
TGC
[ENA]
¡û
>W131050951
AMXE01000135
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
3539
3464
-
Ala
TGC
[ENA]
¡û
>W131051003
AMXF01000339
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
1539
1464
-
Ala
TGC
[ENA]
¡û
>C001278
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
206517
206592
+
Ala
TGC
[Ensembl]
¡û
>C001280
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
772439
772514
+
Ala
TGC
[Ensembl]
¡û
>C001295
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1393621
1393696
+
Ala
TGC
[Ensembl]
¡û
>C001309
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
3515226
3515151
-
Ala
TGC
[Ensembl]
¡û
>WENV180000129
CZVZ01002053
[CZVZ] metagenome; unknown
659
584
-
Ala
TGC
[ENA]
¢þ
>WENV180284720
OBID01096939
[OBID] metagenome; sludge
554
479
-
Ala
TGC
[ENA]
¢þ
>WENV180297717
OBJA01068802
[OBJA] soil metagenome; sediment, water from around vicinity
760
835
+
Ala
TGC
[ENA]
¢þ
>W141078541
ATJV01000095
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
1761
1836
+
Ala
TGC
[ENA]
¡û
>W08007988
ABKT01000002
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
87948
87876
-
Ala
TGC
[ENA]
¡û
>WENV170000156
AERA01018188
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
198
123
-
Ala
TGC
[ENA]
¢þ
>WENV170000258
AERA01035706
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
83
8
-
Ala
TGC
[ENA]
¢þ
>WENV170560825
CZCA01000664
[CZCA] anaerobic digester metagenome; anaerobic digester
1894
1969
+
Ala
TGC
[ENA]
¢þ
>WENV170646152
JQGG01001674
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
754
679
-
Ala
TGC
[ENA]
¢þ
>WENV170649482
JRYC01011049
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
476
401
-
Ala
TGC
[ENA]
¢þ
>WENV170649936
JRYD01000825
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
193
268
+
Ala
TGC
[ENA]
¢þ
>WENV170650143
JRYD01015217
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
208
133
-
Ala
TGC
[ENA]
¢þ
>WENV170650213
JRYD01024078
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
134
209
+
Ala
TGC
[ENA]
¢þ
>WENV170650455
JRYE01000859
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
296
221
-
Ala
TGC
[ENA]
¢þ
>WENV170650457
JRYE01000860
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
183
258
+
Ala
TGC
[ENA]
¢þ
>WENV170650778
JRYE01018571
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
340
265
-
Ala
TGC
[ENA]
¢þ
>WENV170650780
JRYE01018572
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
344
269
-
Ala
TGC
[ENA]
¢þ
>WENV170652452
JRYH01003700
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
367
292
-
Ala
TGC
[ENA]
¢þ
>WENV170652454
JRYH01003702
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
963
888
-
Ala
TGC
[ENA]
¢þ
>WENV170654696
JRYL01006630
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
213
288
+
Ala
TGC
[ENA]
¢þ
>WENV170654736
JRYL01010788
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
197
122
-
Ala
TGC
[ENA]
¢þ
>WENV170658211
JTFP01068280
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
15
90
+
Ala
TGC
[ENA]
¢þ
>WENV170658394
JTFP01102086
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
423
348
-
Ala
TGC
[ENA]
¢þ
>WENV170658585
JTFP01152627
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
304
229
-
Ala
TGC
[ENA]
¢þ
>WENV170714795
LNFM01102693
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
879
804
-
Ala
TGC
[ENA]
¢þ
>C181081438
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
681553
681628
+
Ala
TGC
-
¡û
>C181081466
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
5146928
5147003
+
Ala
TGC
-
¡û
>C181081476
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2779958
2779883
-
Ala
TGC
-
¡û
>C181081482
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2178920
2178845
-
Ala
TGC
-
¡û
>C181164155
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
520884
520959
+
Ala
TGC
-
¡û
>C181164169
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
1687681
1687756
+
Ala
TGC
-
¡û
>C181164188
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2839964
2839889
-
Ala
TGC
-
¡û
>C181164193
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2320774
2320699
-
Ala
TGC
-
¡û
>W141561744
JHYR01000043
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
682
607
-
Ala
TGC
[ENA]
¡û
>W1911114394
NOIH01000038
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
3411
3336
-
Ala
TGC
[ENA]
¡û
>W1810444929
PZKC01000027
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
3461
3386
-
Ala
TGC
[ENA]
¡û
>W1810679180
QKOE01000044
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
2484
2409
-
Ala
TGC
[ENA]
¡û
>C10113173
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
456131
456206
+
Ala
TGC
[Ensembl]
¡û
>C10113176
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1781112
1781187
+
Ala
TGC
[Ensembl]
¡û
>C10113193
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
4024180
4024105
-
Ala
TGC
[Ensembl]
¡û
>C10113200
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3499701
3499626
-
Ala
TGC
[Ensembl]
¡û
>WENV11100514
AERA01018188
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
198
123
-
Ala
TGC
[ENA]
¡û
>WENV11100616
AERA01035706
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
83
8
-
Ala
TGC
[ENA]
¡û
>W1511398307
JTDM01000020
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
404010
404085
+
Ala
TGC
[ENA]
¡û
>W1511398319
JTDM01000021
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
960784
960709
-
Ala
TGC
[ENA]
¡û
>W1511686435
LFRJ01000011
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1853
1928
+
Ala
TGC
[ENA]
¡û
>W1511686442
LFRJ01000014
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
638478
638403
-
Ala
TGC
[ENA]
¡û
>W1511686486
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
390550
390475
-
Ala
TGC
[ENA]
¡û
>W1511686488
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
136324
136249
-
Ala
TGC
[ENA]
¡û
>W11185921
CACR01001740
Betaproteobacteria
Thauera selenatis AX [CACR]
212
287
+
Ala
TGC
[ENA]
¡û
>C161075112
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2935915
2935840
-
Ala
TGC
[Ensembl]
¡û
>C161075114
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2681631
2681556
-
Ala
TGC
[Ensembl]
¡û
>C161075120
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2233769
2233694
-
Ala
TGC
[Ensembl]
¡û
>C161075124
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
1593332
1593257
-
Ala
TGC
[Ensembl]
¡û
>C161095065
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
222592
222667
+
Ala
TGC
-
¡û
>C161095067
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
821024
821099
+
Ala
TGC
-
¡û
>C161095082
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1477013
1477088
+
Ala
TGC
-
¡û
>C161095097
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
3592047
3591972
-
Ala
TGC
-
¡û
>W1610042904
BAZL01000098
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
1839
1914
+
Ala
TGC
[ENA]
¡û
>W1610071723
BCUG01000113
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
867
792
-
Ala
TGC
[ENA]
¡û
>W1611063321
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
3734
3659
-
Ala
TGC
[ENA]
¡û
>W1611063331
MBFM01000002
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
330742
330667
-
Ala
TGC
[ENA]
¡û
>W1611063362
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
507691
507616
-
Ala
TGC
[ENA]
¡û
>W1611063368
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
5752
5677
-
Ala
TGC
[ENA]
¡û
>ENV001052
AY484708
Environmental sample from ENV division of INSDC
627
702
+
Ala
TGC
[ENA]
>ENV001086
AY484727
Environmental sample from ENV division of INSDC
626
701
+
Ala
TGC
[ENA]
>W1710040064
BAZL01000098
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
1839
1914
+
Ala
TGC
[ENA]
¡û
>W1710068925
BCUG01000113
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
867
792
-
Ala
TGC
[ENA]
¡û
>W1710539484
FNVJ01000051
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
3513
3438
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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