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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455723 (32 seq.)
>C171085201
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
462561
462486
-
Lys
CTT
-
¡û
>W131050738
AMXA01000052
Betaproteobacteria
Thauera sp. 28 [AMXA]
7773
7698
-
Lys
CTT
[ENA]
¡û
>W131050790
AMXB01000073
Betaproteobacteria
Thauera sp. 27 [AMXB]
1859
1934
+
Lys
CTT
[ENA]
¡û
>W131050841
AMXC01000056
Betaproteobacteria
Thauera sp. 63 [AMXC]
7303
7228
-
Lys
CTT
[ENA]
¡û
>W131050863
AMXD01000011
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
18469
18544
+
Lys
CTT
[ENA]
¡û
>W131050919
AMXE01000008
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
10427
10352
-
Lys
CTT
[ENA]
¡û
>W131050976
AMXF01000056
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
7748
7673
-
Lys
CTT
[ENA]
¡û
>WENV180000110
CZVZ01000324
[CZVZ] metagenome; unknown
70
145
+
Lys
CTT
[ENA]
¢þ
>W141078510
ATJV01000035
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
37675
37750
+
Lys
CTT
[ENA]
¡û
>W08008007
ABKT01000025
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
4972
5047
+
Lys
CTT
[ENA]
¡û
>WENV170561244
CZCA01005017
[CZCA] anaerobic digester metagenome; anaerobic digester
2242
2317
+
Lys
CTT
[ENA]
¢þ
>WENV170650622
JRYE01007078
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2769
2694
-
Lys
CTT
[ENA]
¢þ
>WENV170652737
JRYH01020552
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1409
1484
+
Lys
CTT
[ENA]
¢þ
>WENV170653203
JRYI01016120
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
341
416
+
Lys
CTT
[ENA]
¢þ
>WENV170654692
JRYL01005599
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2349
2424
+
Lys
CTT
[ENA]
¢þ
>C181043017
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
90083
90008
-
Lys
CTT
-
¡û
>C181164208
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
451082
451007
-
Lys
CTT
-
¡û
>C181165160
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
3126917
3126842
-
Lys
CTT
-
¡û
>C181176831
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
87380
87305
-
Lys
CTT
-
¡û
>W141561699
JHYR01000003
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
53624
53549
-
Lys
CTT
[ENA]
¡û
>W1911114344
NOIH01000002
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
138034
138109
+
Lys
CTT
[ENA]
¡û
>W1810444915
PZKC01000009
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
162364
162439
+
Lys
CTT
[ENA]
¡û
>W1810679130
QKOE01000001
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
318225
318300
+
Lys
CTT
[ENA]
¡û
>C10113191
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
4255989
4256064
+
Lys
CTT
[Ensembl]
¡û
>W1511398315
JTDM01000020
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
169399
169324
-
Lys
CTT
[ENA]
¡û
>W1511686446
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
321041
321116
+
Lys
CTT
[ENA]
¡û
>W11185932
CACR01001866
Betaproteobacteria
Thauera selenatis AX [CACR]
110
185
+
Lys
CTT
[ENA]
¡û
>C161075099
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
2866406
2866481
+
Lys
CTT
[Ensembl]
¡û
>W1610042922
BAZL01000443
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
171
246
+
Lys
CTT
[ENA]
¡û
>W1710040082
BAZL01000443
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
171
246
+
Lys
CTT
[ENA]
¡û
>W1710539459
FNVJ01000010
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
37112
37037
-
Lys
CTT
[ENA]
¡û
>W1710595713
FTMD01000001
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
204373
204448
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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