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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455801 (15 seq.)
>A171002052
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299568
299496
-
His
GTG
-
¡û
>A171004020
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339071
338996
-
His
GTG
-
¡û
>A171007316
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716387
1716462
+
His
GTG
-
¡û
>A171007346
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
965157
965232
+
His
GTG
-
¡û
>A171007398
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096925
2097000
+
His
GTG
-
¡û
>A171007666
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2131519
2131591
+
His
GTG
-
¡û
>WENV180037386
FVAA010986548
[FVAA] soil metagenome; Soil
54
126
+
His
GTG
[ENA]
¢þ
>WENV170021464
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1723
1648
-
His
GTG
[ENA]
¢þ
>WENV170677322
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4789
4864
+
His
GTG
[ENA]
¢þ
>WENV170976350
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2588
2663
+
His
GTG
[ENA]
¢þ
>W1910575098
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145559
2145631
+
His
GTG
[ENA]
¡û
>W1610006216
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13459
13384
-
His
GTG
[ENA]
¡û
>W1610011024
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
49880
49805
-
His
GTG
[ENA]
¡û
>W1610049154
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
96235
96310
+
His
GTG
[ENA]
¡û
>W1610613876
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4789
4864
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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