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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456298 (98 seq.)
>A171004363
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
4211907
4211979
+
Gln
TTG
-
¡û
>A171004537
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2155518
2155446
-
Gln
TTG
-
¡û
>A171004587
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1887469
1887541
+
Gln
TTG
-
¡û
>A171004640
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2519130
2519058
-
Gln
TTG
-
¡û
>A171004682
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3604087
3604159
+
Gln
TTG
-
¡û
>A171004765
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
352290
352218
-
Gln
TTG
-
¡û
>A171004790
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4589613
4589686
+
Gln
TTG
-
¡û
>A171004843
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4534653
4534725
+
Gln
TTG
-
¡û
>A171004900
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4987349
4987422
+
Gln
TTG
-
¡û
>A171004975
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
326403
326331
-
Gln
TTG
-
¡û
>A171005027
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
326077
326005
-
Gln
TTG
-
¡û
>A171005079
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
321938
321866
-
Gln
TTG
-
¡û
>A171005131
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
320366
320294
-
Gln
TTG
-
¡û
>A171005184
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
330604
330532
-
Gln
TTG
-
¡û
>A171005218
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3844237
3844165
-
Gln
TTG
-
¡û
>A171005290
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
411780
411708
-
Gln
TTG
-
¡û
>A171005319
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
4274341
4274413
+
Gln
TTG
-
¡û
>A171005416
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
4233107
4233179
+
Gln
TTG
-
¡û
>A171005471
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
4217290
4217362
+
Gln
TTG
-
¡û
>A171005529
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4548635
4548563
-
Gln
TTG
-
¡û
>A171005584
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
4250322
4250394
+
Gln
TTG
-
¡û
>A171005633
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
4167268
4167340
+
Gln
TTG
-
¡û
>WENV180345883
OBLN01008770
[OBLN] sediment metagenome; sediment
1509
1581
+
Gln
TTG
[ENA]
¢þ
>WENV181312383
OFJB01102640
[OFJB] sludge metagenome; sludge
185
257
+
Gln
TTG
[ENA]
¢þ
>WENV170008018
AMZC01000262
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
13530
13458
-
Gln
TTG
[ENA]
¢þ
>At1400
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5370305
5370377
+
Gln
TTG
[Ensembl]
¡û
>At1441
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1516507
1516579
+
Gln
TTG
[Ensembl]
¡û
>At1512
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1232615
1232687
+
Gln
TTG
[Ensembl]
¡û
>WENV170690620
LFRM01352576
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4435
4507
+
Gln
TTG
[ENA]
¢þ
>WENV170690758
LFRM01359875
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
28734
28806
+
Gln
TTG
[ENA]
¢þ
>WENV170720395
LSQX01151725
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17429
17357
-
Gln
TTG
[ENA]
¢þ
>WENV170784294
MCHG01000494
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1359
1431
+
Gln
TTG
[ENA]
¢þ
>W1910230868
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
27358
27430
+
Gln
TTG
[ENA]
¡û
>W1910569241
JJOR01000084
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
80269
80341
+
Gln
TTG
[ENA]
¡û
>W1910569288
JJOS01000022
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
41140
41068
-
Gln
TTG
[ENA]
¡û
>W1910569352
JJOT01000052
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
10515
10587
+
Gln
TTG
[ENA]
¡û
>W1910569427
JJOU01000232
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
14970
15042
+
Gln
TTG
[ENA]
¡û
>W1910569698
JJPA01000076
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
13852
13924
+
Gln
TTG
[ENA]
¡û
>W1910569778
JJPB01000131
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
102698
102626
-
Gln
TTG
[ENA]
¡û
>W1910569817
JJPC01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
17686
17614
-
Gln
TTG
[ENA]
¡û
>W1910569845
JJPD01000035
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
682
754
+
Gln
TTG
[ENA]
¡û
>W1910569919
JJPE01000117
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
682
754
+
Gln
TTG
[ENA]
¡û
>W1910569988
JJPF01000141
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
103764
103692
-
Gln
TTG
[ENA]
¡û
>W1910570022
JJPG01000113
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
108755
108827
+
Gln
TTG
[ENA]
¡û
>W1910570084
JJPH01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
103786
103714
-
Gln
TTG
[ENA]
¡û
>W1910570098
JJPI01000015
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
79904
79832
-
Gln
TTG
[ENA]
¡û
>W1910570160
JJPJ01000045
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
79879
79807
-
Gln
TTG
[ENA]
¡û
>W1910570198
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
185465
185537
+
Gln
TTG
[ENA]
¡û
>W1910570277
JJPL01000127
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
17686
17614
-
Gln
TTG
[ENA]
¡û
>W1910570338
JJPM01000279
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
15191
15119
-
Gln
TTG
[ENA]
¡û
>W1910570376
JJPN01000108
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
80305
80233
-
Gln
TTG
[ENA]
¡û
>W1910570407
JJPO01000014
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
17591
17519
-
Gln
TTG
[ENA]
¡û
>W1910570460
JJPP01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
92700
92628
-
Gln
TTG
[ENA]
¡û
>W1910570523
JJPQ01000098
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
10516
10588
+
Gln
TTG
[ENA]
¡û
>W1910570549
JJPR01000019
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
14950
15022
+
Gln
TTG
[ENA]
¡û
>W1910570600
JJPS01000002
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
10475
10547
+
Gln
TTG
[ENA]
¡û
>W1910570688
JJPT01000148
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
13035
13107
+
Gln
TTG
[ENA]
¡û
>W1910570738
JJPU01000154
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
79940
79868
-
Gln
TTG
[ENA]
¡û
>W1910570782
JJPV01000076
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
79264
79192
-
Gln
TTG
[ENA]
¡û
>W1910570845
JJPW01000105
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
79763
79691
-
Gln
TTG
[ENA]
¡û
>W1910570860
JJPX01000040
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
10480
10552
+
Gln
TTG
[ENA]
¡û
>W1910570908
JJPY01000016
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
104043
103971
-
Gln
TTG
[ENA]
¡û
>W1910570980
JJPZ01000101
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
80253
80181
-
Gln
TTG
[ENA]
¡û
>W1910571005
JJQA01000010
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
116830
116758
-
Gln
TTG
[ENA]
¡û
>W1910571101
JJQB01000140
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
109728
109656
-
Gln
TTG
[ENA]
¡û
>W1910571104
JJQC01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
116815
116743
-
Gln
TTG
[ENA]
¡û
>W1910571181
JJQD01000142
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
17631
17559
-
Gln
TTG
[ENA]
¡û
>W1910571238
JJQE01000150
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
103764
103692
-
Gln
TTG
[ENA]
¡û
>W1910571283
JJQF01000095
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
108909
108837
-
Gln
TTG
[ENA]
¡û
>W1910571316
JJQG01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
14972
15044
+
Gln
TTG
[ENA]
¡û
>W1910571401
JJQH01000199
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
14972
15044
+
Gln
TTG
[ENA]
¡û
>W1910571409
JJQI01000004
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
127378
127306
-
Gln
TTG
[ENA]
¡û
>W1910571500
JJQJ01000199
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
10514
10586
+
Gln
TTG
[ENA]
¡û
>W1910571529
JJQK01000095
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
9350
9278
-
Gln
TTG
[ENA]
¡û
>W1910571631
JJQM01000073
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
10512
10584
+
Gln
TTG
[ENA]
¡û
>W1910571680
JJQN01000017
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
46761
46689
-
Gln
TTG
[ENA]
¡û
>W1910571764
JJQO01000138
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
10510
10582
+
Gln
TTG
[ENA]
¡û
>W1910571845
JJQP01000314
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
10504
10576
+
Gln
TTG
[ENA]
¡û
>W1910571850
JJQQ01000002
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
15116
15188
+
Gln
TTG
[ENA]
¡û
>W1910571930
JJQR01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
18879
18807
-
Gln
TTG
[ENA]
¡û
>W1910571955
JJQS01000023
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
14972
15044
+
Gln
TTG
[ENA]
¡û
>W1910572018
JJQT01000076
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
4023
4095
+
Gln
TTG
[ENA]
¡û
>W1910572098
JJQU01000252
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
41096
41024
-
Gln
TTG
[ENA]
¡û
>W1910572119
JJQV01000039
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
10513
10585
+
Gln
TTG
[ENA]
¡û
>W1910572176
JJQW01000088
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
14972
15044
+
Gln
TTG
[ENA]
¡û
>W1910572213
JJQX01000053
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
14987
15059
+
Gln
TTG
[ENA]
¡û
>W1910572320
JJQZ01000083
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
14972
15044
+
Gln
TTG
[ENA]
¡û
>W1910572372
JJRA01000082
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
14921
14993
+
Gln
TTG
[ENA]
¡û
>W1910572406
JJRB01000042
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
14942
15014
+
Gln
TTG
[ENA]
¡û
>W1910575037
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
561213
561285
+
Gln
TTG
[ENA]
¡û
>W1910635241
LMVP01000087
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
1337
1409
+
Gln
TTG
[ENA]
¡û
>W1910655375
LZPK01000041
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
22050
21978
-
Gln
TTG
[ENA]
¡û
>W1910694805
MDTP02000153
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1357
1429
+
Gln
TTG
[ENA]
¡û
>W1610000007
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
902915
902843
-
Gln
TTG
[ENA]
¡û
>W1610045103
BBBC01000035
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
13810
13882
+
Gln
TTG
[ENA]
¡û
>W1610046903
BBCW01000032
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
51552
51477
-
Gln
TTG
[ENA]
¡û
>W1610048604
BBEF01000038
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
968
1040
+
Gln
TTG
[ENA]
¡û
>W1610670273
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
26962
27034
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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