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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456299 (32 seq.)
>A171004353
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3056954
3057028
+
Asp
GTC
-
¡û
>A171004661
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
179253
179179
-
Asp
GTC
-
¡û
>A171004713
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
176390
176316
-
Asp
GTC
-
¡û
>A171004737
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3998455
3998528
+
Asp
GTC
-
¡û
>A171004818
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
216250
216177
-
Asp
GTC
-
¡û
>A171004871
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
213285
213212
-
Asp
GTC
-
¡û
>A171004923
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
244252
244178
-
Asp
GTC
-
¡û
>A171005190
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
149834
149908
+
Asp
GTC
-
¡û
>A171005260
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4791457
4791530
+
Asp
GTC
-
¡û
>A171005309
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2933533
2933607
+
Asp
GTC
-
¡û
>A171005417
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
4279201
4279275
+
Asp
GTC
-
¡û
>A171005472
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
4261151
4261225
+
Asp
GTC
-
¡û
>A171005530
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4441646
4441572
-
Asp
GTC
-
¡û
>A171005605
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
288346
288272
-
Asp
GTC
-
¡û
>A171005620
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2795725
2795799
+
Asp
GTC
-
¡û
>WENV180345431
OBLN01000080
[OBLN] sediment metagenome; sediment
28839
28766
-
Asp
GTC
[ENA]
¢þ
>At1404
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
259768
259696
-
Asp
GTC
[Ensembl]
¡û
>At1443
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1623497
1623569
+
Asp
GTC
[Ensembl]
¡û
>WENV170784230
MCHG01000176
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
12254
12181
-
Asp
GTC
[ENA]
¢þ
>W1910569441
JJOV01000031
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
88207
88280
+
Asp
GTC
[ENA]
¡û
>W1910569492
JJOW01000123
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
11679
11606
-
Asp
GTC
[ENA]
¡û
>W1910569546
JJOX01000048
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
167868
167941
+
Asp
GTC
[ENA]
¡û
>W1910569603
JJOY01000023
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
15221
15148
-
Asp
GTC
[ENA]
¡û
>W1910569644
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
15221
15148
-
Asp
GTC
[ENA]
¡û
>W1910571602
JJQL01000079
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
41459
41386
-
Asp
GTC
[ENA]
¡û
>W1910572279
JJQY01000114
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
57801
57728
-
Asp
GTC
[ENA]
¡û
>W1910635239
LMVP01000064
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
4049
3975
-
Asp
GTC
[ENA]
¡û
>W1910655406
LZPK01000362
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
17289
17363
+
Asp
GTC
[ENA]
¡û
>W1910694787
MDTP02000070
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
20480
20553
+
Asp
GTC
[ENA]
¡û
>W1610000012
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
7299
7225
-
Asp
GTC
[ENA]
¡û
>W1610046891
BBCW01000020
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
42427
42354
-
Asp
GTC
[ENA]
¡û
>W1610048616
BBEF01000078
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
8909
8835
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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