This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456400 (87 seq.)
>W1710861482
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
676627
676552
-
Glu
TTC
[ENA]
¡û
>W1710865356
LMGP01000015
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
386837
386762
-
Glu
TTC
[ENA]
¡û
>W1710866675
LMHQ01000029
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
199825
199750
-
Glu
TTC
[ENA]
¡û
>W1710868463
LMJC01000004
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
145557
145632
+
Glu
TTC
[ENA]
¡û
>W1710892934
LNEG01000112
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
4552
4477
-
Glu
TTC
[ENA]
¡û
>W1711581695
MNUL01000047
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
162
87
-
Glu
TTC
[ENA]
¡û
>W1711721724
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
3973684
3973609
-
Glu
TTC
[ENA]
¡û
>W1712096722
NIAZ01000033
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
300
225
-
Glu
TTC
[ENA]
¡û
>C171049692
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
4321912
4321837
-
Glu
TTC
-
¡û
>C171049695
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
4321528
4321453
-
Glu
TTC
-
¡û
>C171091679
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1104186
1104261
+
Glu
TTC
-
¡û
>C171118075
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
2519357
2519282
-
Glu
TTC
-
¡û
>C171118078
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
2518977
2518902
-
Glu
TTC
-
¡û
>C171118126
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
2553778
2553703
-
Glu
TTC
-
¡û
>C171118129
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
2553399
2553324
-
Glu
TTC
-
¡û
>C171118151
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
1438224
1438299
+
Glu
TTC
-
¡û
>C171118154
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
1438606
1438681
+
Glu
TTC
-
¡û
>C171118229
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
2642895
2642820
-
Glu
TTC
-
¡û
>C171118232
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
2642513
2642438
-
Glu
TTC
-
¡û
>C171120928
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
1509254
1509329
+
Glu
TTC
-
¡û
>C171120931
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
1509634
1509709
+
Glu
TTC
-
¡û
>C017334
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1662620
1662695
+
Glu
TTC
[Ensembl]
¡û
>C026303
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
3741908
3741833
-
Glu
TTC
[Ensembl]
¡û
>WENV181379668
OFRD01005609
[OFRD] wastewater metagenome; Exp Tend CN 100WW
155
230
+
Glu
TTC
[ENA]
¢þ
>WENV181381763
OFRF01006715
[OFRF] wastewater metagenome; Exp Tend CN 50WW
539
464
-
Glu
TTC
[ENA]
¢þ
>W141142431
AWQR01000005
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
414384
414309
-
Glu
TTC
[ENA]
¡û
>C08007648
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
1662620
1662695
+
Glu
TTC
[Ensembl]
¡û
>W141278761
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
2245436
2245511
+
Glu
TTC
[ENA]
¡û
>W141278764
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
2245816
2245891
+
Glu
TTC
[ENA]
¡û
>ENV08001305
ABMW01016369
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
23
98
+
Glu
TTC
[ENA]
¡û
>WENV170601261
FUWD010164665
[FUWD] metagenome; unknown
338
413
+
Glu
TTC
[ENA]
¢þ
>WENV170639761
JFJP01007154
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6579
6504
-
Glu
TTC
[ENA]
¢þ
>WENV170707326
LNAP01017488
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
80
5
-
Glu
TTC
[ENA]
¢þ
>WENV170708680
LNAP01101775
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
20
95
+
Glu
TTC
[ENA]
¢þ
>WENV170708806
LNAQ01001410
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1502
1427
-
Glu
TTC
[ENA]
¢þ
>WENV170708809
LNAQ01001410
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1122
1047
-
Glu
TTC
[ENA]
¢þ
>WENV170712347
LNFM01012250
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4752
4827
+
Glu
TTC
[ENA]
¢þ
>C181158596
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
166319
166244
-
Glu
TTC
-
¡û
>C181158599
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
165934
165859
-
Glu
TTC
-
¡û
>C191073195
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
168039
167964
-
Glu
TTC
-
¡û
>C191099867
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1652270
1652345
+
Glu
TTC
-
¡û
>C191099870
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1652639
1652714
+
Glu
TTC
-
¡û
>W09101622
AAFQ02000008
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
61008
61083
+
Glu
TTC
[ENA]
¡û
>W09106040
AASQ01000010
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
170304
170229
-
Glu
TTC
[ENA]
¡û
>W09133920
ACQT01000055
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
4261
4336
+
Glu
TTC
[ENA]
¡û
>W09133923
ACQT01000055
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
4638
4713
+
Glu
TTC
[ENA]
¡û
>W1910700228
MESI01000021
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
8701
8776
+
Glu
TTC
[ENA]
¡û
>W1910700265
MESJ01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
34157
34082
-
Glu
TTC
[ENA]
¡û
>W1911770756
QXJC01000013
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
617
542
-
Glu
TTC
[ENA]
¡û
>W1911770759
QXJC01000013
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
215
140
-
Glu
TTC
[ENA]
¡û
>W1911775409
QXNC01000009
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
17338
17263
-
Glu
TTC
[ENA]
¡û
>SRA1001415
SRR001064.183459
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
23
98
+
Glu
TTC
[SRA]
>W1810071510
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
2484195
2484120
-
Glu
TTC
[ENA]
¡û
>W1810071628
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1553072
1552997
-
Glu
TTC
[ENA]
¡û
>W1810071631
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1552703
1552628
-
Glu
TTC
[ENA]
¡û
>W1810072493
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
2273215
2273140
-
Glu
TTC
[ENA]
¡û
>W1810072496
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
2272846
2272771
-
Glu
TTC
[ENA]
¡û
>W1810089221
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
2267535
2267610
+
Glu
TTC
[ENA]
¡û
>W1810089224
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
2267921
2267996
+
Glu
TTC
[ENA]
¡û
>W1810173340
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
2469644
2469719
+
Glu
TTC
[ENA]
¡û
>SRA1003234
SRR002326.326863
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
94
169
+
Glu
TTC
[SRA]
>SRA1003658
SRR002327.101803
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
32
107
+
Glu
TTC
[SRA]
>W1810474701
QAIM01000513
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
14860
14785
-
Glu
TTC
[ENA]
¡û
>W1810513808
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
1384743
1384818
+
Glu
TTC
[ENA]
¡û
>W1810573104
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
1655711
1655636
-
Glu
TTC
[ENA]
¡û
>W1810573107
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
1655338
1655263
-
Glu
TTC
[ENA]
¡û
>W1810573524
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
4949354
4949279
-
Glu
TTC
[ENA]
¡û
>W1810573559
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
1848
1773
-
Glu
TTC
[ENA]
¡û
>W1810683063
QKVP01000005
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
540613
540688
+
Glu
TTC
[ENA]
¡û
>W1810697058
QLTU01000001
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
215626
215551
-
Glu
TTC
[ENA]
¡û
>W1810697061
QLTU01000001
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
215246
215171
-
Glu
TTC
[ENA]
¡û
>W1810750700
QOZT01000056
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
17835
17760
-
Glu
TTC
[ENA]
¡û
>W1810750703
QOZT01000056
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
17455
17380
-
Glu
TTC
[ENA]
¡û
>W1810884767
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
1999967
1999892
-
Glu
TTC
[ENA]
¡û
>W1810884770
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
1999594
1999519
-
Glu
TTC
[ENA]
¡û
>W11156559
AFBG01000022
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
252220
252145
-
Glu
TTC
[ENA]
¡û
>W11156601
AFBH01000023
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
92474
92549
+
Glu
TTC
[ENA]
¡û
>W121084908
AKIV01000046
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
100992
100917
-
Glu
TTC
[ENA]
¡û
>W1610723828
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
676627
676552
-
Glu
TTC
[ENA]
¡û
>W1610727702
LMGP01000015
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
386837
386762
-
Glu
TTC
[ENA]
¡û
>W1610729021
LMHQ01000029
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
199825
199750
-
Glu
TTC
[ENA]
¡û
>W1610730809
LMJC01000004
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
145557
145632
+
Glu
TTC
[ENA]
¡û
>W1610753200
LNEG01000112
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
4552
4477
-
Glu
TTC
[ENA]
¡û
>W1710523389
FNHX01000002
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
668652
668577
-
Glu
TTC
[ENA]
¡û
>W1710532495
FNQJ01000001
Betaproteobacteria
Acidovorax soli [FNQJ]
154061
154136
+
Glu
TTC
[ENA]
¡û
>W1710532498
FNQJ01000001
Betaproteobacteria
Acidovorax soli [FNQJ]
154445
154520
+
Glu
TTC
[ENA]
¡û
>W1710578312
FPBM01000006
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
148998
149073
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK