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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457604 (72 seq.)
>W1710776023
LIZH01000145
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
365
290
-
Thr
CGT
[ENA]
¡û
>W1710871783
LMLM01000012
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
523095
523020
-
Thr
CGT
[ENA]
¡û
>W1710874773
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
546712
546637
-
Thr
CGT
[ENA]
¡û
>W1710924036
LOCQ01000060
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
389507
389582
+
Thr
CGT
[ENA]
¡û
>W1710934514
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
109839
109914
+
Thr
CGT
[ENA]
¡û
>W1711033365
LRHV01000028
Betaproteobacteria
Duganella sp. HH105 [LRHV]
27166
27241
+
Thr
CGT
[ENA]
¡û
>W1711046630
LROM01000117
Betaproteobacteria
Duganella phyllosphaerae [LROM]
8063
8138
+
Thr
CGT
[ENA]
¡û
>W1711046666
LRON01000005
Betaproteobacteria
Duganella sp. HH101 [LRON]
25816
25891
+
Thr
CGT
[ENA]
¡û
>W1711147343
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
670849
670924
+
Thr
CGT
[ENA]
¡û
>W1711149052
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
329964
330039
+
Thr
CGT
[ENA]
¡û
>W1711149125
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
106850
106925
+
Thr
CGT
[ENA]
¡û
>W1711149162
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
777102
777177
+
Thr
CGT
[ENA]
¡û
>W1711281990
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1147159
1147234
+
Thr
CGT
[ENA]
¡û
>W1711282023
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
615404
615479
+
Thr
CGT
[ENA]
¡û
>C171035184
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
761452
761527
+
Thr
CGT
-
¡û
>W131050133
AMWD01000002
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
3199672
3199597
-
Thr
CGT
[ENA]
¡û
>W131176171
ARJV01000022
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
540987
540912
-
Thr
CGT
[ENA]
¡û
>W131179059
ARMC01000004
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
178298
178373
+
Thr
CGT
[ENA]
¡û
>W131181088
ARNP01000142
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
155429
155354
-
Thr
CGT
[ENA]
¡û
>W131214376
ATUB01000100
Betaproteobacteria
Betaproteobacteria bacterium JGI 001014-D05 [ATUB]
724
799
+
Thr
CGT
[ENA]
¡û
>C007468
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
778283
778358
+
Thr
CGT
[Ensembl]
¡û
>C017376
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
670849
670924
+
Thr
CGT
[Ensembl]
¡û
>WENV180035266
FTKT01057471
[FTKT] metagenome; soil
162
237
+
Thr
CGT
[ENA]
¢þ
>WENV180283734
OBID01002160
[OBID] metagenome; sludge
5029
4954
-
Thr
CGT
[ENA]
¢þ
>WENV181372247
OFQW01033490
[OFQW] wastewater metagenome; Exp Tend NO 90WW
424
349
-
Thr
CGT
[ENA]
¢þ
>WENV181376509
OFQZ01058311
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
496
421
-
Thr
CGT
[ENA]
¢þ
>WENV181381175
OFRE01036989
[OFRE] wastewater metagenome; Exp Tend NO 50WW
297
372
+
Thr
CGT
[ENA]
¢þ
>WENV181390072
OFRO01017169
[OFRO] wastewater metagenome; Exp Tend NO 10WW
1379
1304
-
Thr
CGT
[ENA]
¢þ
>WENV170012405
APMI01169571
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
277
202
-
Thr
CGT
[ENA]
¢þ
>WENV170552017
CXWJ01034502
[CXWJ] wastewater metagenome; activated sludge
1867
1792
-
Thr
CGT
[ENA]
¢þ
>WENV170559179
CXWL01112895
[CXWL] groundwater metagenome; biofilm material
7152
7227
+
Thr
CGT
[ENA]
¢þ
>WENV170639378
JFJP01002159
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
25593
25518
-
Thr
CGT
[ENA]
¢þ
>WENV170684320
LFRM01032174
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6004
5929
-
Thr
CGT
[ENA]
¢þ
>W09100908
AADF01000011
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
92012
91937
-
Thr
CGT
[ENA]
¡û
>W09106272
AAUC01000002
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
258123
258198
+
Thr
CGT
[ENA]
¡û
>C181187676
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
480936
481011
+
Thr
CGT
-
¡û
>C181219102
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
903169
903094
-
Thr
CGT
-
¡û
>C191081648
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
672175
672250
+
Thr
CGT
-
¡û
>W1910942549
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
1297293
1297218
-
Thr
CGT
[ENA]
¡û
>W1911490754
OANS01000004
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
168736
168811
+
Thr
CGT
[ENA]
¡û
>W1810062361
PDOB01000008
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
19786
19711
-
Thr
CGT
[ENA]
¡û
>W1810068708
PDZP01000004
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
260913
260988
+
Thr
CGT
[ENA]
¡û
>W1810102012
PGTX01000004
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
95512
95587
+
Thr
CGT
[ENA]
¡û
>W1810672450
QJTL01000001
Betaproteobacteria
Duganella sp. GV083 [QJTL]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810677158
QKMN01000001
Betaproteobacteria
Duganella sp. GV053 [QKMN]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810693394
QLLJ01000001
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810694356
QLLZ01000001
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810699142
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
839003
839078
+
Thr
CGT
[ENA]
¡û
>W1810699189
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
118689
118764
+
Thr
CGT
[ENA]
¡û
>W1810787957
QREC01000001
Betaproteobacteria
Duganella sp. GV023 [QREC]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810885052
QUNB01000001
Betaproteobacteria
Duganella sp. GV032 [QUNB]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810885171
QUND01000001
Betaproteobacteria
Duganella sp. GV046 [QUND]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810885805
QUNP01000001
Betaproteobacteria
Duganella sp. GV038 [QUNP]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810886060
QUNU01000001
Betaproteobacteria
Duganella sp. GV067 [QUNU]
590290
590215
-
Thr
CGT
[ENA]
¡û
>W1810908082
QVIL01000001
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
448333
448258
-
Thr
CGT
[ENA]
¡û
>W1810908147
QVIM01000001
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
295547
295622
+
Thr
CGT
[ENA]
¡û
>W1810908236
QVIN01000003
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
448333
448258
-
Thr
CGT
[ENA]
¡û
>W1810908326
QVIO01000003
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
678855
678780
-
Thr
CGT
[ENA]
¡û
>W1810908402
QVIP01000006
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
1944
1869
-
Thr
CGT
[ENA]
¡û
>C161092387
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1366245
1366170
-
Thr
CGT
[Ensembl]
¡û
>W1610640129
LIZH01000145
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
365
290
-
Thr
CGT
[ENA]
¡û
>W1610734129
LMLM01000012
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
523095
523020
-
Thr
CGT
[ENA]
¡û
>W1610737119
LMNW01000031
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
546712
546637
-
Thr
CGT
[ENA]
¡û
>W1610781682
LOCQ01000060
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
389507
389582
+
Thr
CGT
[ENA]
¡û
>W1610792045
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
109839
109914
+
Thr
CGT
[ENA]
¡û
>W1710515847
FNCD01000002
Betaproteobacteria
Duganella sp. OV458 [FNCD]
158256
158331
+
Thr
CGT
[ENA]
¡û
>W1710519287
FNEQ01000002
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
462123
462048
-
Thr
CGT
[ENA]
¡û
>W1710547601
FODC01000005
Betaproteobacteria
Duganella sp. CF517 [FODC]
341326
341251
-
Thr
CGT
[ENA]
¡û
>W1710557580
FOLD01000005
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
210730
210655
-
Thr
CGT
[ENA]
¡û
>W1710568772
FOTW01000004
Betaproteobacteria
Rugamonas rubra [FOTW]
548112
548187
+
Thr
CGT
[ENA]
¡û
>W1710578378
FPBO01000002
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
286799
286724
-
Thr
CGT
[ENA]
¡û
>W1710593047
FRCX01000018
Betaproteobacteria
Duganella sacchari [FRCX]
38867
38942
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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