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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460338 (31 seq.)
>W1710893734
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>C171100641
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
2381300
2381226
-
Gln
TTG
-
¡û
>C171119421
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2852367
2852293
-
Gln
TTG
-
¡û
>WENV181308462
OFIS01026596
[OFIS] sludge metagenome; sludge
38
112
+
Gln
TTG
[ENA]
¢þ
>WENV183661799
ORJL010137428
[ORJL] groundwater metagenome; groundwater
1867
1793
-
Gln
TTG
[ENA]
¢þ
>W141402025
JDTI01000193
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
175060
174986
-
Gln
TTG
[ENA]
¡û
>WENV170650964
JRYE01089409
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
74
1
-
Gln
TTG
[ENA]
¢þ
>WENV170652249
JRYH01000303
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
10208
10134
-
Gln
TTG
[ENA]
¢þ
>WENV170652271
JRYH01000461
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
13341
13267
-
Gln
TTG
[ENA]
¢þ
>WENV170652754
JRYH01022563
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1359
1285
-
Gln
TTG
[ENA]
¢þ
>WENV170655105
JTFN01005143
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1569
1495
-
Gln
TTG
[ENA]
¢þ
>C191023946
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
819782
819856
+
Gln
TTG
-
¡û
>C191150973
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2463527
2463453
-
Gln
TTG
-
¡û
>W1910231987
FPEI01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1BSMeth3 [FPEI]
228543
228617
+
Gln
TTG
[ENA]
¡û
>W1910232060
FPEJ01000009
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
222046
221972
-
Gln
TTG
[ENA]
¡û
>W1910694720
MDTO01000020
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4006
4080
+
Gln
TTG
[ENA]
¡û
>W1910695669
MDVZ01000295
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
7679
7753
+
Gln
TTG
[ENA]
¡û
>W1910929250
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
38776
38702
-
Gln
TTG
[ENA]
¡û
>W1910990435
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
20401
20475
+
Gln
TTG
[ENA]
¡û
>W1910990515
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
438765
438691
-
Gln
TTG
[ENA]
¡û
>W1910990595
NKUA01000020
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
20296
20370
+
Gln
TTG
[ENA]
¡û
>W1810894182
QUWV01000070
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
69378
69304
-
Gln
TTG
[ENA]
¡û
>C151006036
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3019006
3019080
+
Gln
TTG
[Ensembl]
¡û
>W1511431887
JUFX01000245
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
22620
22694
+
Gln
TTG
[ENA]
¡û
>W11186785
CADP01000031
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
21847
21921
+
Gln
TTG
[ENA]
¡û
>W1610041130
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1610041290
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
>W1610754000
LNFA01000281
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
30634
30560
-
Gln
TTG
[ENA]
¡û
>WENV078191
AAFZ01005319
Fossil microbial community from Whale Fall (Santa Cruz Basin)
245
321
+
Gln
TTG
[ENA]
>W1710038328
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
69408
69334
-
Gln
TTG
[ENA]
¡û
>W1710038488
BANJ01000010
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
20327
20401
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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