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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46069 (86 seq.)
>W1711175219
LWEP01000413
Alphaproteobacteria
Sulfitobacter sp. HI0021 HI0021 [LWEP]
31656
31567
-
Ser
GGA
[ENA]
¡û
>W1711175275
LWEQ01000642
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
2273
2184
-
Ser
GGA
[ENA]
¡û
>W1711175285
LWER01000046
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
31898
31809
-
Ser
GGA
[ENA]
¡û
>W1711175693
LWEX01000401
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
2279
2190
-
Ser
GGA
[ENA]
¡û
>W1711176093
LWFD01000317
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
50318
50407
+
Ser
GGA
[ENA]
¡û
>W1711176883
LWFQ01000298
Alphaproteobacteria
Sulfitobacter sp. HI0076 HI0076 [LWFQ]
12741
12830
+
Ser
GGA
[ENA]
¡û
>W1711177158
LWFW01000278
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
205
294
+
Ser
GGA
[ENA]
¡û
>W1711177159
LWFW01000313
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
5129
5040
-
Ser
GGA
[ENA]
¡û
>W1711177852
LWGH01000589
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
519
608
+
Ser
GGA
[ENA]
¡û
>C018360
CP000362
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [CP000362]
2197740
2197829
+
Ser
GGA
[Ensembl]
¡û
>w011951
AALY01000002
Alphaproteobacteria
Roseovarius nubinhibens ISM [AALY]
45634
45725
+
Ser
GGA
[ENA]
¡û
>WENV180043285
LQAH01022362
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
612
523
-
Ser
GGA
[ENA]
¢þ
>WENV180104987
OAPD01000818
[OAPD] marine metagenome; 2010
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV180110178
OAPM01000964
[OAPM] marine metagenome; ENVO.00002110
216
127
-
Ser
GGA
[ENA]
¢þ
>WENV180112635
OAPP01057866
[OAPP] marine metagenome; Surface water
329
418
+
Ser
GGA
[ENA]
¢þ
>WENV180358511
OBNP01082248
[OBNP] marine metagenome; seawater
315
226
-
Ser
GGA
[ENA]
¢þ
>WENV180367962
OBOF01013269
[OBOF] marine metagenome; ENVO:00002010
691
780
+
Ser
GGA
[ENA]
¢þ
>WENV180376265
OBOM01000225
[OBOM] marine metagenome; Seawater
5978
6067
+
Ser
GGA
[ENA]
¢þ
>WENV180381486
OBOS01000098
[OBOS] marine metagenome; ENVO 00002150
2718
2629
-
Ser
GGA
[ENA]
¢þ
>WENV180595470
OCPD01043144
[OCPD] marine metagenome; Mesotrophic water
244
333
+
Ser
GGA
[ENA]
¢þ
>WENV180595908
OCPG01002288
[OCPG] marine metagenome; ENVO.00002110
651
740
+
Ser
GGA
[ENA]
¢þ
>WENV180637130
OCRG01000472
[OCRG] marine metagenome; seawater
176
87
-
Ser
GGA
[ENA]
¢þ
>W141094774
AVDB01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HIMB11 [AVDB]
339518
339607
+
Ser
GGA
[ENA]
¡û
>W08005753
ABID01000003
Alphaproteobacteria
Sulfitobacter indolifex HEL-45 [ABID]
174765
174679
-
Ser
GGA
[ENA]
¡û
>W08005921
ABIG01000012
Alphaproteobacteria
Roseobacter litoralis Och 149 [ABIG]
25935
25849
-
Ser
GGA
[ENA]
¡û
>W141284774
JAMD01000001
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae H3 [JAMD]
218050
217961
-
Ser
GGA
[ENA]
¡û
>W141290338
JASH01000014
Alphaproteobacteria
Sulfitobacter mediterraneus KCTC 32188 [JASH]
440733
440822
+
Ser
GGA
[ENA]
¡û
>WENV170015512
AZIH01002105
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
2300
2211
-
Ser
GGA
[ENA]
¢þ
>WENV170016440
AZIK01005366
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
600
689
+
Ser
GGA
[ENA]
¢þ
>WENV170454819
CEVA01062628
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
504
415
-
Ser
GGA
[ENA]
¢þ
>W141426677
JEMU01000001
Alphaproteobacteria
Sulfitobacter mediterraneus [JEMU]
45008
44919
-
Ser
GGA
[ENA]
¡û
>WENV170475893
CEVI01047546
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
487
576
+
Ser
GGA
[ENA]
¢þ
>WENV170520847
CEWF01020792
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
323
234
-
Ser
GGA
[ENA]
¢þ
>WENV170580037
FUFK010043685
[FUFK] metagenome; unknown
7510
7421
-
Ser
GGA
[ENA]
¢þ
>WENV170594368
FUFK011292837
[FUFK] metagenome; unknown
347
258
-
Ser
GGA
[ENA]
¢þ
>WENV170595134
FUFK011638530
[FUFK] metagenome; unknown
347
258
-
Ser
GGA
[ENA]
¢þ
>WENV170634349
FYBJ01000314
[FYBJ] marine metagenome; marine
16781
16692
-
Ser
GGA
[ENA]
¢þ
>WENV170674178
LAZR01048822
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
31
120
+
Ser
GGA
[ENA]
¢þ
>WENV170782396
MAAC01009746
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
47445
47534
+
Ser
GGA
[ENA]
¢þ
>C181064483
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
1481436
1481525
+
Ser
GGA
-
¡û
>C181152278
CP027407
Alphaproteobacteria
Roseobacter denitrificans FDAARGOS_309 [CP027407]
220863
220952
+
Ser
GGA
-
¡û
>C191018037
CP020694
Alphaproteobacteria
Sulfitobacter sp. D7 [CP020694]
1872534
1872623
+
Ser
GGA
-
¡û
>C191160524
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
1615933
1615844
-
Ser
GGA
-
¡û
>W141564899
JIBC01000007
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
202857
202946
+
Ser
GGA
[ENA]
¡û
>W1910442617
FWFJ01000003
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
2647
2558
-
Ser
GGA
[ENA]
¡û
>W1910442730
FWFL01000010
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
2633
2544
-
Ser
GGA
[ENA]
¡û
>W1910443229
FWFX01000001
Alphaproteobacteria
Roseovarius albus CECT 7450 [FWFX]
543028
543117
+
Ser
GGA
[ENA]
¡û
>W1910468991
FWXB01000012
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
79388
79477
+
Ser
GGA
[ENA]
¡û
>W1910814134
MVIQ01000001
Alphaproteobacteria
Sulfitobacter indolifex SAORIC-263 [MVIQ]
301684
301595
-
Ser
GGA
[ENA]
¡û
>W1911539374
OMPT01000010
Alphaproteobacteria
Sulfitobacter mediterraneus EL44 [OMPT]
704338
704427
+
Ser
GGA
[ENA]
¡û
>W1911539920
ONZJ01000002
Alphaproteobacteria
Rhodobacteraceae bacterium EL129 [ONZJ]
1513468
1513557
+
Ser
GGA
[ENA]
¡û
>W1911544908
OUMZ01000007
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
1202632
1202543
-
Ser
GGA
[ENA]
¡û
>W1810063494
PDUV01000009
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
328670
328581
-
Ser
GGA
[ENA]
¡û
>W1810494751
QBFE01000021
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
71127
71216
+
Ser
GGA
[ENA]
¡û
>W1810494789
QBFF01000026
Alphaproteobacteria
Pseudosulfitobacter sp. DSM 107133 PIC-76 [QBFF]
55524
55613
+
Ser
GGA
[ENA]
¡û
>W1810504302
QBKU01000002
Alphaproteobacteria
Sulfitobacter mediterraneus DSM 12244 [QBKU]
9694
9605
-
Ser
GGA
[ENA]
¡û
>W1810532459
QCYH01000002
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
140019
140108
+
Ser
GGA
[ENA]
¡û
>W1810584260
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
136086
136175
+
Ser
GGA
[ENA]
¡û
>W1810591644
QFVT01000003
Alphaproteobacteria
Litorivita pollutaquae FSX-11 [QFVT]
77980
78069
+
Ser
GGA
[ENA]
¡û
>W1810670800
QJSD01000005
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
173398
173487
+
Ser
GGA
[ENA]
¡û
>W1810672079
QJTE01000001
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
174921
175010
+
Ser
GGA
[ENA]
¡û
>W1810685682
QKZL01000017
Alphaproteobacteria
Palleronia aestuarii DSM 22009 [QKZL]
51932
52021
+
Ser
GGA
[ENA]
¡û
>W1810719919
QNQP01000001
Alphaproteobacteria
Roseovarius dicentrarchi YLY04 [QNQP]
2568
2479
-
Ser
GGA
[ENA]
¡û
>C11118682
CP002623
Alphaproteobacteria
Roseobacter litoralis Och 149 [CP002623]
2276611
2276522
-
Ser
GGA
[Ensembl]
¡û
>W1511518773
JXYH01000002
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
55418
55329
-
Ser
GGA
[ENA]
¡û
>W1610094582
CYTW01000001
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
1868078
1868167
+
Ser
GGA
[ENA]
¡û
>W1610983532
LWEP01000413
Alphaproteobacteria
Sulfitobacter sp. HI0021 HI0021 [LWEP]
31656
31567
-
Ser
GGA
[ENA]
¡û
>W1610983588
LWEQ01000642
Alphaproteobacteria
Sulfitobacter sp. HI0023 HI0023 [LWEQ]
2273
2184
-
Ser
GGA
[ENA]
¡û
>W1610983598
LWER01000046
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
31898
31809
-
Ser
GGA
[ENA]
¡û
>W1610984006
LWEX01000401
Alphaproteobacteria
Sulfitobacter sp. HI0040 HI0040 [LWEX]
2279
2190
-
Ser
GGA
[ENA]
¡û
>W1610984406
LWFD01000317
Alphaproteobacteria
Sulfitobacter sp. HI0054 [LWFD]
50318
50407
+
Ser
GGA
[ENA]
¡û
>W1610985196
LWFQ01000298
Alphaproteobacteria
Sulfitobacter sp. HI0076 HI0076 [LWFQ]
12741
12830
+
Ser
GGA
[ENA]
¡û
>W1610985471
LWFW01000278
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
205
294
+
Ser
GGA
[ENA]
¡û
>W1610985472
LWFW01000313
Alphaproteobacteria
Sulfitobacter sp. HI0082 HI0082 [LWFW]
5129
5040
-
Ser
GGA
[ENA]
¡û
>W1610986165
LWGH01000589
Alphaproteobacteria
Sulfitobacter sp. HI0129 HI0129 [LWGH]
519
608
+
Ser
GGA
[ENA]
¡û
>W1710515184
FNBP01000004
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
179604
179693
+
Ser
GGA
[ENA]
¡û
>W1710543617
FOAC01000005
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
52476
52387
-
Ser
GGA
[ENA]
¡û
>W1710562023
FOOO01000017
Alphaproteobacteria
Roseobacter denitrificans OCh 114 [FOOO]
31518
31429
-
Ser
GGA
[ENA]
¡û
>W1710562846
FOPG01000001
Alphaproteobacteria
Sulfitobacter dubius [FOPG]
579358
579447
+
Ser
GGA
[ENA]
¡û
>W1710571057
FOVP01000008
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
8955
8866
-
Ser
GGA
[ENA]
¡û
>W1710584510
FQVP01000001
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
701848
701937
+
Ser
GGA
[ENA]
¡û
>W1710587518
FQYO01000006
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
116544
116455
-
Ser
GGA
[ENA]
¡û
>W1710588802
FQZQ01000023
Alphaproteobacteria
Shimia gijangensis [FQZQ]
30110
30199
+
Ser
GGA
[ENA]
¡û
>W1710591164
FRBN01000021
Alphaproteobacteria
Roseovarius marisflavi [FRBN]
58864
58953
+
Ser
GGA
[ENA]
¡û
>W1710598222
FTNV01000002
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
51737
51648
-
Ser
GGA
[ENA]
¡û
>W1710606903
FWYD01000014
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
4253
4164
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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