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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.46093 (55 seq.)
>W1710989553
LPWA01000001
Alphaproteobacteria
Mesorhizobium loti [LPWA]
302617
302706
+
Ser
GGA
[ENA]
¡û
>W1711257269
LYTM01000054
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
251737
251826
+
Ser
GGA
[ENA]
¡û
>W1711257320
LYTO01000346
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
16599
16688
+
Ser
GGA
[ENA]
¡û
>W1711257358
LYTP01000023
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
84937
84848
-
Ser
GGA
[ENA]
¡û
>W1711353177
MDDT01000024
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
404881
404792
-
Ser
GGA
[ENA]
¡û
>W1711353207
MDDU01000002
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
328814
328903
+
Ser
GGA
[ENA]
¡û
>W1711354765
MDFL01000159
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
20454
20365
-
Ser
GGA
[ENA]
¡û
>W1711385406
MEEE01000080
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
8546
8457
-
Ser
GGA
[ENA]
¡û
>W1711505397
MKVL01000038
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
188260
188349
+
Ser
GGA
[ENA]
¡û
>W131219392
ATYO01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
351208
351297
+
Ser
GGA
[ENA]
¡û
>W131226546
AUEL01000006
Alphaproteobacteria
Mesorhizobium sp. URHA0056 [AUEL]
50170
50259
+
Ser
GGA
[ENA]
¡û
>WENV180020670
FTCZ01008167
[FTCZ] metagenome; soil
4325
4414
+
Ser
GGA
[ENA]
¢þ
>W141073750
ASTL01000004
Alphaproteobacteria
Mesorhizobium ciceri ca181 [ASTL]
40256
40345
+
Ser
GGA
[ENA]
¡û
>WENV181167410
OEIU01026865
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
472
561
+
Ser
GGA
[ENA]
¢þ
>WENV181308222
OFIS01001015
[OFIS] sludge metagenome; sludge
6681
6592
-
Ser
GGA
[ENA]
¢þ
>WENV181402506
OFTY01002930
[OFTY] sludge metagenome; sludge
1809
1720
-
Ser
GGA
[ENA]
¢þ
>W141197521
AYVL01000004
Alphaproteobacteria
Mesorhizobium sp. LSJC280B00 [AYVL]
177412
177323
-
Ser
GGA
[ENA]
¡û
>W141266660
CCMY01000002
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
72667
72578
-
Ser
GGA
[ENA]
¡û
>W141266749
CCMZ01000075
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
40339
40250
-
Ser
GGA
[ENA]
¡û
>W141266764
CCNA01000006
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
527133
527222
+
Ser
GGA
[ENA]
¡û
>W141266836
CCNB01000043
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
568959
569048
+
Ser
GGA
[ENA]
¡û
>W141266850
CCNC01000046
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
222298
222209
-
Ser
GGA
[ENA]
¡û
>W141266899
CCNE01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
361572
361661
+
Ser
GGA
[ENA]
¡û
>WENV170010162
APMI01010018
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5558
5469
-
Ser
GGA
[ENA]
¢þ
>WENV170712190
LNFM01010647
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12848
12759
-
Ser
GGA
[ENA]
¢þ
>WENV170712766
LNFM01017453
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8140
8229
+
Ser
GGA
[ENA]
¢þ
>WENV170713222
LNFM01026664
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5
94
+
Ser
GGA
[ENA]
¢þ
>C191125553
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
4980929
4980840
-
Ser
GGA
-
¡û
>C191125574
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
1639656
1639745
+
Ser
GGA
-
¡û
>C191125705
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
3097125
3097036
-
Ser
GGA
-
¡û
>C191125760
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
2345938
2345849
-
Ser
GGA
-
¡û
>C191125805
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
4763393
4763304
-
Ser
GGA
-
¡û
>C191125850
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4739453
4739364
-
Ser
GGA
-
¡û
>C191184146
CP040914
Alphaproteobacteria
Mesorhizobium sp. 8 [CP040914]
1993461
1993550
+
Ser
GGA
-
¡û
>W1911156024
NPKH01000033
Alphaproteobacteria
Mesorhizobium wenxiniae WYCCWR 10195 [NPKH]
42223
42312
+
Ser
GGA
[ENA]
¡û
>W1911156078
NPKI01000039
Alphaproteobacteria
Mesorhizobium mediterraneum USDA 3392 [NPKI]
45344
45433
+
Ser
GGA
[ENA]
¡û
>W1911156145
NPKJ01000077
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
283
372
+
Ser
GGA
[ENA]
¡û
>W1911242449
NSFT01000003
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
42598
42509
-
Ser
GGA
[ENA]
¡û
>W1911242679
NSFY01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
536662
536751
+
Ser
GGA
[ENA]
¡û
>W1911242725
NSFZ01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
531824
531913
+
Ser
GGA
[ENA]
¡û
>W1911242794
NSGA01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
219401
219490
+
Ser
GGA
[ENA]
¡û
>W1911242885
NSGC01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
318508
318597
+
Ser
GGA
[ENA]
¡û
>W1911242932
NSGD01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
418257
418346
+
Ser
GGA
[ENA]
¡û
>W1911242975
NSGE01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
251081
250992
-
Ser
GGA
[ENA]
¡û
>W1911243036
NSGF01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
58327
58238
-
Ser
GGA
[ENA]
¡û
>W1911243088
NSGG01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
1827
1738
-
Ser
GGA
[ENA]
¡û
>W1911695523
QMBQ01000002
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
228375
228286
-
Ser
GGA
[ENA]
¡û
>W1810698986
QMBP01000002
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
418190
418279
+
Ser
GGA
[ENA]
¡û
>W1610083677
CCND01000017
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
252463
252552
+
Ser
GGA
[ENA]
¡û
>W1610844429
LPWA01000001
Alphaproteobacteria
Mesorhizobium loti [LPWA]
302617
302706
+
Ser
GGA
[ENA]
¡û
>W1611020245
LYTM01000054
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
251737
251826
+
Ser
GGA
[ENA]
¡û
>W1611020342
LYTO01000346
Alphaproteobacteria
Mesorhizobium sp. AA22 [LYTO]
16599
16688
+
Ser
GGA
[ENA]
¡û
>W1611020380
LYTP01000023
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
84937
84848
-
Ser
GGA
[ENA]
¡û
>W1710088694
CCND01000017
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
252463
252552
+
Ser
GGA
[ENA]
¡û
>W1710571270
FOVT01000026
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
46495
46406
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK