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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.468172 (96 seq.)
>W1711054788
LRUC01000002
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
9999
9924
-
Ala
TGC
[ENA]
¡û
>W1711054803
LRUC01000011
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
3649
3574
-
Ala
TGC
[ENA]
¡û
>W1711054806
LRUC01000012
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
2202
2277
+
Ala
TGC
[ENA]
¡û
>W1711054828
LRUC01000038
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
28228
28153
-
Ala
TGC
[ENA]
¡û
>W1711054842
LRUD01000002
Alphaproteobacteria
Celeribacter halophilus [LRUD]
90997
91072
+
Ala
TGC
[ENA]
¡û
>W131045415
AMRK01000028
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
320
395
+
Ala
TGC
[ENA]
¡û
>W131181017
ARNO01000020
Alphaproteobacteria
Woodsholea maritima DSM 17123 [ARNO]
2314
2389
+
Ala
TGC
[ENA]
¡û
>W131181022
ARNO01000025
Alphaproteobacteria
Woodsholea maritima DSM 17123 [ARNO]
44948
45023
+
Ala
TGC
[ENA]
¡û
>W1711711805
MTBG01000072
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
2026
2101
+
Ala
TGC
[ENA]
¡û
>PL171000365
CP002019
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 plasmid:1
264313
264388
+
Ala
TGC
[ENA]
¡û
>PL171000409
CP002225
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 plasmid:pYP1
231578
231653
+
Ala
TGC
[ENA]
¡û
>PL171000909
CP012909
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 plasmid:1
61134
61209
+
Ala
TGC
[ENA]
¡û
>PL171001270
CP016593
Alphaproteobacteria
Ketogulonicigenium vulgare SKV plasmid:pKvSKV1
61131
61206
+
Ala
TGC
[ENA]
¡û
>C171064512
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
14991
15066
+
Ala
TGC
-
¡û
>C171064515
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
122035
122110
+
Ala
TGC
-
¡û
>C171064518
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
390024
390099
+
Ala
TGC
-
¡û
>C171064523
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
541610
541685
+
Ala
TGC
-
¡û
>C171064556
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2092485
2092410
-
Ala
TGC
-
¡û
>C171101118
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
25034
25109
+
Ala
TGC
-
¡û
>C171101122
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
139181
139256
+
Ala
TGC
-
¡û
>C171101127
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
277743
277818
+
Ala
TGC
-
¡û
>C171101132
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
467719
467794
+
Ala
TGC
-
¡û
>C171101135
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
496549
496624
+
Ala
TGC
-
¡û
>C171101164
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1545014
1544939
-
Ala
TGC
-
¡û
>w018775
AATP01000006
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
42711
42788
+
Ala
TGC
[ENA]
¡û
>w018772
AATP01000004
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
43603
43526
-
Ala
TGC
[ENA]
¡û
>w018761
AATP01000002
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
614484
614561
+
Ala
TGC
[ENA]
¡û
>WENV180014334
FPIC01176889
[FPIC] soil metagenome; Soil
125
50
-
Ala
TGC
[ENA]
¢þ
>WENV180014771
FQKF010138471
[FQKF] soil metagenome; Soil
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV180294739
OBIY01440501
[OBIY] beach sand metagenome; beach sand
66
141
+
Ala
TGC
[ENA]
¢þ
>WENV180594078
OCOY01027532
[OCOY] marine metagenome; ENVO:00002010
171
246
+
Ala
TGC
[ENA]
¢þ
>W141063326
APGJ01000007
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
59759
59834
+
Ala
TGC
[ENA]
¡û
>WENV181323633
OFKY01024482
[OFKY] marine metagenome; sea ice
268
343
+
Ala
TGC
[ENA]
¢þ
>WENV183631426
OOGU01109077
[OOGU] marine metagenome; sea ice
136
61
-
Ala
TGC
[ENA]
¢þ
>WENV170015682
AZII01002740
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
1008
933
-
Ala
TGC
[ENA]
¢þ
>WENV170135646
CENU01266554
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
541
466
-
Ala
TGC
[ENA]
¢þ
>WENV170229036
CEQG01068054
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
815
740
-
Ala
TGC
[ENA]
¢þ
>WENV170668260
LADL02002197
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2445
2370
-
Ala
TGC
[ENA]
¢þ
>WENV170675564
LDZP01000040
[LDZP] terrestrial metagenome; oil reservoir sample I1
2257
2182
-
Ala
TGC
[ENA]
¢þ
>WENV170729889
LULG01003332
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
107
182
+
Ala
TGC
[ENA]
¢þ
>WENV170736457
LULM01004067
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
141
66
-
Ala
TGC
[ENA]
¢þ
>WENV170961853
MLJW01002616
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
622
697
+
Ala
TGC
[ENA]
¢þ
>WENV170962970
MRWF01031865
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
810
885
+
Ala
TGC
[ENA]
¢þ
>WENV170964571
MRWG01019589
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
833
758
-
Ala
TGC
[ENA]
¢þ
>W141485054
JFZB01000074
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
1448
1523
+
Ala
TGC
[ENA]
¡û
>C181060593
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
2362569
2362494
-
Ala
TGC
-
¡û
>C181060596
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
1837193
1837118
-
Ala
TGC
-
¡û
>C181060604
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
1216442
1216367
-
Ala
TGC
-
¡û
>W1910443049
FWFS01000019
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
2353
2428
+
Ala
TGC
[ENA]
¡û
>W1910443313
FWFY01000030
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
1753
1828
+
Ala
TGC
[ENA]
¡û
>W1910859311
NBYO01000001
Alphaproteobacteria
Notoacmeibacter marinus XMTR2A4 [NBYO]
1579741
1579816
+
Ala
TGC
[ENA]
¡û
>W1911189731
NQWH01000073
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
395
320
-
Ala
TGC
[ENA]
¡û
>W1911539798
ONZF01000044
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
486
561
+
Ala
TGC
[ENA]
¡û
>W1911539800
ONZF01000045
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
455
530
+
Ala
TGC
[ENA]
¡û
>SRA1002242
SRR001308.325037
Metagenomic characterization of a wastewater treatment plant (SRP000180)
140
215
+
Ala
TGC
[SRA]
>SRA1002323
SRR001308.374360
Metagenomic characterization of a wastewater treatment plant (SRP000180)
140
212
+
Ala
TGC
[SRA]
>W1810158040
PJCH01000003
Alphaproteobacteria
Marinicaulis flavus SY-3-19 [PJCH]
67169
67094
-
Ala
TGC
[ENA]
¡û
>W1810400404
PYGB01000029
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
1945
2020
+
Ala
TGC
[ENA]
¡û
>W1810445059
PZKG01000195
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
3682
3607
-
Ala
TGC
[ENA]
¡û
>W1810476832
QAOH01000052
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
3747
3672
-
Ala
TGC
[ENA]
¡û
>W1810626019
QHKP01000020
Alphaproteobacteria
Notoacmeibacter marinus HMA008 [QHKP]
2579
2654
+
Ala
TGC
[ENA]
¡û
>W1810686016
QKZS01000062
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
2033
2108
+
Ala
TGC
[ENA]
¡û
>W1810889093
QURL01000011
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
4409
4334
-
Ala
TGC
[ENA]
¡û
>C151006740
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
473563
473638
+
Ala
TGC
[Ensembl]
¡û
>C151006745
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
927641
927716
+
Ala
TGC
[Ensembl]
¡û
>C11111812
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2504118
2504193
+
Ala
TGC
[Ensembl]
¡û
>C11111815
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2611159
2611234
+
Ala
TGC
[Ensembl]
¡û
>C11111820
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
2762726
2762801
+
Ala
TGC
[Ensembl]
¡û
>C11111836
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1548877
1548802
-
Ala
TGC
[Ensembl]
¡û
>C11111848
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
14991
15066
+
Ala
TGC
[Ensembl]
¡û
>C11111851
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
239876
239951
+
Ala
TGC
[Ensembl]
¡û
>C11111857
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
399919
399994
+
Ala
TGC
[Ensembl]
¡û
>C11111888
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1955792
1955717
-
Ala
TGC
[Ensembl]
¡û
>C161047240
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
128934
129009
+
Ala
TGC
-
¡û
>C161047243
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
235976
236051
+
Ala
TGC
-
¡û
>C161047248
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
387544
387619
+
Ala
TGC
-
¡û
>C161047280
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1939259
1939184
-
Ala
TGC
-
¡û
>C161099967
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
128918
128993
+
Ala
TGC
-
¡û
>C161099970
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
235952
236027
+
Ala
TGC
-
¡û
>C161099975
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
387533
387608
+
Ala
TGC
-
¡û
>C161100007
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1938212
1938137
-
Ala
TGC
-
¡û
>W1610056838
BBWO01000045
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
315
390
+
Ala
TGC
[ENA]
¡û
>W1610056839
BBWO01000047
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
637
562
-
Ala
TGC
[ENA]
¡û
>W1610895834
LRUC01000002
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
9999
9924
-
Ala
TGC
[ENA]
¡û
>W1610895849
LRUC01000011
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
3649
3574
-
Ala
TGC
[ENA]
¡û
>W1610895852
LRUC01000012
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
2202
2277
+
Ala
TGC
[ENA]
¡û
>W1610895874
LRUC01000038
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
28228
28153
-
Ala
TGC
[ENA]
¡û
>W1610895888
LRUD01000002
Alphaproteobacteria
Celeribacter halophilus [LRUD]
90997
91072
+
Ala
TGC
[ENA]
¡û
>W1710015512
AQQS01000074
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
708
783
+
Ala
TGC
[ENA]
¡û
>W1710053537
BBWO01000045
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
315
390
+
Ala
TGC
[ENA]
¡û
>W1710053538
BBWO01000047
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
637
562
-
Ala
TGC
[ENA]
¡û
>W1710514218
FNAT01000020
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
1862
1937
+
Ala
TGC
[ENA]
¡û
>W1710515037
FNBL01000004
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
2131
2056
-
Ala
TGC
[ENA]
¡û
>W1710515055
FNBL01000022
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
2131
2056
-
Ala
TGC
[ENA]
¡û
>W1710529341
FNNW01000057
Alphaproteobacteria
Celeribacter indicus [FNNW]
2026
2101
+
Ala
TGC
[ENA]
¡û
>W1710565582
FORH01000018
Alphaproteobacteria
Celeribacter neptunius [FORH]
3719
3644
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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