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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47416 (18 seq.)
>A171000186
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
89022
89109
+
Leu
TAA
-
¡û
>A171001894
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
224243
224156
-
Leu
TAA
-
¡û
>A171002596
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
902673
902586
-
Leu
TAA
-
¡û
>A171004064
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
331267
331180
-
Leu
TAA
-
¡û
>A171006494
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
258307
258220
-
Leu
TAA
-
¡û
>A171006588
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1433086
1433173
+
Leu
TAA
-
¡û
>A171006651
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1181721
1181808
+
Leu
TAA
-
¡û
>A171007089
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
200073
200160
+
Leu
TAA
-
¡û
>At1952
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1323082
1322995
-
Leu
TAA
[Ensembl]
¡û
>WENV170675975
LDZQ01001546
[LDZQ] terrestrial metagenome; oil reservoir sample I2
10037
9950
-
Leu
TAA
[ENA]
¢þ
>WENV170676190
LDZR01001521
[LDZR] terrestrial metagenome; oil reservoir sample K2
8009
7922
-
Leu
TAA
[ENA]
¢þ
>W1910229989
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
528818
528731
-
Leu
TAA
[ENA]
¡û
>W1610000712
ABSF01000008
Euryarchaeota
Thermococcus barophilus MP [ABSF]
8079
8166
+
Leu
TAA
[ENA]
¡û
>W1610005304
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
10055
9968
-
Leu
TAA
[ENA]
¡û
>W1610005598
AKID01000115
Euryarchaeota
Thermococcus sp. PK [AKID]
15253
15166
-
Leu
TAA
[ENA]
¡û
>W1610612437
LGET01000005
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
10037
9950
-
Leu
TAA
[ENA]
¡û
>W1610638247
LIXN01000018
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
62773
62686
-
Leu
TAA
[ENA]
¡û
>W1610717918
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
90080
89993
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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