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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480904 (57 seq.)
>W1710875322
LMOH01000012
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
589654
589727
+
Gln
CTG
[ENA]
¡û
>W1710878222
LMQT01000023
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
237244
237317
+
Gln
CTG
[ENA]
¡û
>W1710878360
LMQW01000048
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
2634
2561
-
Gln
CTG
[ENA]
¡û
>W1710878437
LMQY01000036
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
263981
264054
+
Gln
CTG
[ENA]
¡û
>W1711083577
LSVB01000009
Alphaproteobacteria
Brucella anthropi [LSVB]
157116
157189
+
Gln
CTG
[ENA]
¡û
>W131182205
ARQE01000005
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
18975
19048
+
Gln
CTG
[ENA]
¡û
>W1711589370
MOEC01000002
Alphaproteobacteria
Brucella cytisi [MOEC]
356487
356414
-
Gln
CTG
[ENA]
¡û
>C171060740
CP017315
Alphaproteobacteria
Candidatus Tokpelaia hoelldoblerii [CP017315]
1217577
1217650
+
Gln
CTG
-
¡û
>WENV180311798
OBJT01581617
[OBJT] soil metagenome; soil
91
164
+
Gln
CTG
[ENA]
¢þ
>W141041486
AMCC01000120
Alphaproteobacteria
Brucella anthropi 60a [AMCC]
156
229
+
Gln
CTG
[ENA]
¡û
>C08007066
CP000759
Alphaproteobacteria
Brucella anthropi ATCC 49188 [CP000758, CP000759]
299796
299726
-
Gln
CTG
[Ensembl]
¡û
>W141428568
JENZ01000005
Alphaproteobacteria
Brucella anthropi [JENZ]
343069
342996
-
Gln
CTG
[ENA]
¡û
>W141485450
JFZJ01000158
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
6529
6602
+
Gln
CTG
[ENA]
¡û
>W141779823
JOOD01000010
Alphaproteobacteria
Ochrobactrum sp. UNC390CL2Tsu3S39 [JOOD]
99223
99296
+
Gln
CTG
[ENA]
¡û
>W1910620073
LKAD01000024
Alphaproteobacteria
Ochrobactrum sp. DDT2 [LKAD]
98542
98615
+
Gln
CTG
[ENA]
¡û
>W1911084563
NNRN01000053
Alphaproteobacteria
Brucella lupini LUP21 [NNRN]
282280
282207
-
Gln
CTG
[ENA]
¡û
>W1911565830
PCOI01000002
Alphaproteobacteria
Ochrobactrum sp. MYb49 [PCOI]
1519158
1519231
+
Gln
CTG
[ENA]
¡û
>W1810273173
PSNV01000007
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
32476
32403
-
Gln
CTG
[ENA]
¡û
>W1810607966
QGST01000003
Alphaproteobacteria
Ochrobactrum sp. POC9 [QGST]
182493
182420
-
Gln
CTG
[ENA]
¡û
>W1810701836
QMFN01000004
Alphaproteobacteria
Brucella anthropi DE2010 [QMFN]
326876
326803
-
Gln
CTG
[ENA]
¡û
>SRA1015535
SRR023846.101595
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
186
113
-
Gln
CTG
[SRA]
>SRA1015578
SRR023846.117430
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
108
-
Gln
CTG
[SRA]
>SRA1015917
SRR023846.260304
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
108
-
Gln
CTG
[SRA]
>SRA1016067
SRR023846.335300
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
263
190
-
Gln
CTG
[SRA]
>SRA1016252
SRR023846.419227
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
181
108
-
Gln
CTG
[SRA]
>C151037892
CP008819
Alphaproteobacteria
Brucella anthropi OAB [CP008819, CP008820]
948392
948465
+
Gln
CTG
[Ensembl]
¡û
>W10112715
ADFF01000022
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
32964
33037
+
Gln
CTG
[ENA]
¡û
>W11115942
ADFF01000022
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
32964
33037
+
Gln
CTG
[ENA]
¡û
>C11119019
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
3846240
3846167
-
Gln
CTG
[Ensembl]
¡û
>W1511525215
JYFX01000014
Alphaproteobacteria
Brucella anthropi ML7 [JYFX]
27688
27615
-
Gln
CTG
[ENA]
¡û
>C161003890
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
1683864
1683791
-
Gln
CTG
[Ensembl]
¡û
>W121055819
AIII01000028
Alphaproteobacteria
Brucella anthropi CTS-325 [AIII]
217885
217812
-
Gln
CTG
[ENA]
¡û
>W1610056457
BBWH01000011
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
41187
41260
+
Gln
CTG
[ENA]
¡û
>W1610056497
BBWI01000004
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
295654
295727
+
Gln
CTG
[ENA]
¡û
>W1610056546
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
80748
80821
+
Gln
CTG
[ENA]
¡û
>W1610056647
BBWL01000009
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
37553
37480
-
Gln
CTG
[ENA]
¡û
>W1610056708
BBWM01000029
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
84724
84797
+
Gln
CTG
[ENA]
¡û
>W1610056996
BBWS01000020
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
7999
7926
-
Gln
CTG
[ENA]
¡û
>W1610057079
BBWT01000035
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
4697
4624
-
Gln
CTG
[ENA]
¡û
>W1610588122
LDPZ01000018
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
24365
24438
+
Gln
CTG
[ENA]
¡û
>W1610588177
LDQA01000022
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
156609
156536
-
Gln
CTG
[ENA]
¡û
>W1610737668
LMOH01000012
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
589654
589727
+
Gln
CTG
[ENA]
¡û
>W1610740568
LMQT01000023
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
237244
237317
+
Gln
CTG
[ENA]
¡û
>W1610740706
LMQW01000048
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
2634
2561
-
Gln
CTG
[ENA]
¡û
>W1610740783
LMQY01000036
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
263981
264054
+
Gln
CTG
[ENA]
¡û
>W1610922330
LSVB01000009
Alphaproteobacteria
Brucella anthropi [LSVB]
157116
157189
+
Gln
CTG
[ENA]
¡û
>W1710053156
BBWH01000011
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
41187
41260
+
Gln
CTG
[ENA]
¡û
>W1710053196
BBWI01000004
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
295654
295727
+
Gln
CTG
[ENA]
¡û
>W1710053245
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
80748
80821
+
Gln
CTG
[ENA]
¡û
>W1710053346
BBWL01000009
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
37553
37480
-
Gln
CTG
[ENA]
¡û
>W1710053407
BBWM01000029
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
84724
84797
+
Gln
CTG
[ENA]
¡û
>W1710053695
BBWS01000020
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
7999
7926
-
Gln
CTG
[ENA]
¡û
>W1710053778
BBWT01000035
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
4697
4624
-
Gln
CTG
[ENA]
¡û
>W1710561246
FOOA01000001
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
469941
470014
+
Gln
CTG
[ENA]
¡û
>W1710583215
FQUP01000012
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
20538
20611
+
Gln
CTG
[ENA]
¡û
>W1710707402
LDPZ01000018
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
24365
24438
+
Gln
CTG
[ENA]
¡û
>W1710707457
LDQA01000022
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
156609
156536
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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