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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481134 (83 seq.)
>A171000810
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
868996
869068
+
Pro
GGG
-
¡û
>A171001169
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2131858
2131930
+
Pro
GGG
-
¡û
>A171001408
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2358828
2358758
-
Pro
GGG
-
¡û
>A171001570
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
1074170
1074241
+
Pro
GGG
-
¡û
>A171004151
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2018182
2018111
-
Pro
GGG
-
¡û
>A171006218
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2461093
2461023
-
Pro
GGG
-
¡û
>A171007167
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2146260
2146188
-
Pro
GGG
-
¡û
>WENV180318308
OBKM01000367
[OBKM] metagenome; water
16412
16342
-
Pro
GGG
[ENA]
¢þ
>WENV180318509
OBKM01001422
[OBKM] metagenome; water
9482
9552
+
Pro
GGG
[ENA]
¢þ
>WENV180318559
OBKM01001938
[OBKM] metagenome; water
3151
3080
-
Pro
GGG
[ENA]
¢þ
>WENV170009003
APHM01019599
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
442
513
+
Pro
GGG
[ENA]
¢þ
>WENV170009137
APHM01021435
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
89219
89147
-
Pro
GGG
[ENA]
¢þ
>WENV170009182
APHM01021504
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
62111
62181
+
Pro
GGG
[ENA]
¢þ
>At0876
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2068931
2068861
-
Pro
GGG
[Ensembl]
¡û
>WENV170660025
JXWS01094585
[JXWS] soil metagenome; rice field; elevated CO2
360
289
-
Pro
GGG
[ENA]
¢þ
>WENV170681435
LFFM01000874
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5939
6010
+
Pro
GGG
[ENA]
¢þ
>WENV170681445
LFFM01000910
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
15510
15437
-
Pro
GGG
[ENA]
¢þ
>WENV170681568
LFFM01001454
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
11752
11822
+
Pro
GGG
[ENA]
¢þ
>WENV170681823
LFFM01003119
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8157
8085
-
Pro
GGG
[ENA]
¢þ
>WENV170682175
LFFM01006934
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
6096
6169
+
Pro
GGG
[ENA]
¢þ
>WENV170701996
LKMJ01000236
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
27233
27306
+
Pro
GGG
[ENA]
¢þ
>WENV170702700
LKMJ01003608
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10368
10295
-
Pro
GGG
[ENA]
¢þ
>W1910006705
BBJO01000030
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
94906
94978
+
Pro
GGG
[ENA]
¡û
>W1910186241
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
123519
123448
-
Pro
GGG
[ENA]
¡û
>W1910193563
CSTE01000006
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
71712
71783
+
Pro
GGG
[ENA]
¡û
>W1910227090
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
674137
674066
-
Pro
GGG
[ENA]
¡û
>W1910228434
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
189394
189324
-
Pro
GGG
[ENA]
¡û
>W1910228584
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
324241
324311
+
Pro
GGG
[ENA]
¡û
>W1910229630
FOAD01000005
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
48181
48109
-
Pro
GGG
[ENA]
¡û
>W1910230362
FOOQ01000002
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
401630
401702
+
Pro
GGG
[ENA]
¡û
>W1910230392
FOPZ01000002
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
26704
26634
-
Pro
GGG
[ENA]
¡û
>W1910230709
FOYS01000003
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
567961
567889
-
Pro
GGG
[ENA]
¡û
>W1910230753
FOYT01000002
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
507753
507824
+
Pro
GGG
[ENA]
¡û
>W1910573475
JPES01000013
Euryarchaeota
Haloferax sp. ATB1 [JPES]
17870
17799
-
Pro
GGG
[ENA]
¡û
>W1910574994
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
85605
85535
-
Pro
GGG
[ENA]
¡û
>W1911629790
PSYS01000004
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
384023
384094
+
Pro
GGG
[ENA]
¡û
>W1911629828
PSYT01000002
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911629851
PSYU01000001
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
387737
387808
+
Pro
GGG
[ENA]
¡û
>W1911629926
PSYV01000002
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
386429
386499
+
Pro
GGG
[ENA]
¡û
>W1911629975
PSYW01000002
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
400307
400377
+
Pro
GGG
[ENA]
¡û
>W1911630035
PSYX01000003
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
386429
386499
+
Pro
GGG
[ENA]
¡û
>W1911630078
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
396917
396987
+
Pro
GGG
[ENA]
¡û
>W1911655710
QEQI01000002
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
432185
432115
-
Pro
GGG
[ENA]
¡û
>W1911655743
QEQJ01000002
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
180876
180947
+
Pro
GGG
[ENA]
¡û
>W1911682238
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
521904
521832
-
Pro
GGG
[ENA]
¡û
>W1911696715
QMIM01000001
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
61383
61453
+
Pro
GGG
[ENA]
¡û
>W1911709507
QPLO01000002
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911709556
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
383954
384025
+
Pro
GGG
[ENA]
¡û
>W1911709635
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
474085
474157
+
Pro
GGG
[ENA]
¡û
>W1911717833
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
2562906
2562835
-
Pro
GGG
[ENA]
¡û
>W1911769983
QXIJ01000004
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
150159
150231
+
Pro
GGG
[ENA]
¡û
>SRA1013802
SRR023631.35141
High saltern (Pond 5) microbes attempt 1 (SRP001107)
12
82
+
Pro
GGG
[SRA]
>W1610000754
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
2076184
2076256
+
Pseudo
GGG
[ENA]
¡û
>W1610011530
ANPG01000558
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
3209
3280
+
Pseudo
GGG
[ENA]
¡û
>W1610011750
AOHT01000007
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
25776
25848
+
Pseudo
GGG
[ENA]
¡û
>W1610011806
AOHU01000045
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
22536
22466
-
Pseudo
GGG
[ENA]
¡û
>W1610011846
AOHV01000011
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
30383
30454
+
Pseudo
GGG
[ENA]
¡û
>W1610012860
AOIV01000010
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
29295
29224
-
Pseudo
GGG
[ENA]
¡û
>W1610013158
AOJI01000022
Euryarchaeota
Halorubrum aidingense JCM 13560 [AOJI]
88439
88512
+
Pseudo
GGG
[ENA]
¡û
>W1610013488
AOLD01000044
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
111511
111440
-
Pseudo
GGG
[ENA]
¡û
>W1610013513
AOLE01000011
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
21301
21230
-
Pseudo
GGG
[ENA]
¡û
>W1610013570
AOLF01000022
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
195591
195520
-
Pseudo
GGG
[ENA]
¡û
>W1610013634
AOLG01000047
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
329123
329193
+
Pseudo
GGG
[ENA]
¡û
>W1610013659
AOLH01000008
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
6649
6720
+
Pseudo
GGG
[ENA]
¡û
>W1610013717
AOLI01000019
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
335937
336009
+
Pseudo
GGG
[ENA]
¡û
>W1610013779
AOLJ01000015
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
35124
35194
+
Pseudo
GGG
[ENA]
¡û
>W1610013844
AOLK01000022
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
148092
148020
-
Pseudo
GGG
[ENA]
¡û
>W1610013896
AOLL01000030
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
29959
29889
-
Pseudo
GGG
[ENA]
¡û
>W1610013924
AOLM01000012
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
155792
155721
-
Pseudo
GGG
[ENA]
¡û
>W1610013965
AOLN01000008
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
35216
35287
+
Pseudo
GGG
[ENA]
¡û
>W1610014046
AOLO01000012
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
5019
4947
-
Pseudo
GGG
[ENA]
¡û
>W1610014082
AOLP01000012
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
181296
181226
-
Pseudo
GGG
[ENA]
¡û
>W1610018977
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
156168
156239
+
Pseudo
GGG
[ENA]
¡û
>W1610019097
ARPX01000190
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
88061
87989
-
Pseudo
GGG
[ENA]
¡û
>W1610019123
ARPY01000158
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
75259
75189
-
Pseudo
GGG
[ENA]
¡û
>W1610019181
ARPZ01000203
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
1395
1466
+
Pseudo
GGG
[ENA]
¡û
>W1610029925
AXZD01000007
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
169747
169818
+
Pseudo
GGG
[ENA]
¡û
>W1610675777
LKIR01000099
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
5802
5872
+
Pseudo
GGG
[ENA]
¡û
>W1610682345
LKMU01000001
Euryarchaeota
Halorubrum sp. PL-Br10_E2g5 [LKMU]
27233
27306
+
Pseudo
GGG
[ENA]
¡û
>W1610682416
LKMY01000001
Euryarchaeota
Nanohaloarchaea archaeon PL-Br10_U2g5 [LKMY]
27233
27306
+
Pseudo
GGG
[ENA]
¡û
>W1610784300
LOEP01000027
Euryarchaeota
Haloferax sp. Q22 [LOEP]
95307
95377
+
Pseudo
GGG
[ENA]
¡û
>W1610799842
LOPV01000147
Euryarchaeota
Haloferax profundi SB29 [LOPV]
139
66
-
Pseudo
GGG
[ENA]
¡û
>W1610799881
LOPW01000014
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
167582
167511
-
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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