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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481142 (20 seq.)
>A171000769
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
982643
982715
+
His
GTG
-
¡û
>A171002607
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
31433
31505
+
His
GTG
-
¡û
>A171003940
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
43834
43906
+
His
GTG
-
¡û
>A171005797
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1638641
1638713
+
His
GTG
-
¡û
>WENV180318626
OBKM01003056
[OBKM] metagenome; water
917
989
+
His
GTG
[ENA]
¢þ
>At0763
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2445667
2445737
+
His
GTG
[Ensembl]
¡û
>At1731
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
2500419
2500349
-
His
GTG
[Ensembl]
¡û
>WENV170659967
JXWS01062105
[JXWS] soil metagenome; rice field; elevated CO2
213
285
+
His
GTG
[ENA]
¢þ
>WENV170659968
JXWS01062106
[JXWS] soil metagenome; rice field; elevated CO2
278
350
+
His
GTG
[ENA]
¢þ
>WENV170660000
JXWS01077927
[JXWS] soil metagenome; rice field; elevated CO2
265
193
-
His
GTG
[ENA]
¢þ
>WENV170701787
LKMJ01000013
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
16206
16278
+
His
GTG
[ENA]
¢þ
>W1910617582
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
837444
837516
+
His
GTG
[ENA]
¡û
>W1911709449
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
1206554
1206626
+
His
GTG
[ENA]
¡û
>W1911709586
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
1283832
1283904
+
His
GTG
[ENA]
¡û
>W1911770021
QXIK01000003
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
377694
377766
+
His
GTG
[ENA]
¡û
>W1610000807
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
2744050
2743978
-
His
GTG
[ENA]
¡û
>W1610014254
AOLW01000006
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
128745
128673
-
His
GTG
[ENA]
¡û
>W1610018973
AQZY01000005
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
119113
119185
+
His
GTG
[ENA]
¡û
>W1610061905
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2357005
2357077
+
His
GTG
[ENA]
¡û
>W1610881052
LRHL01000043
Euryarchaeota
Haloarcula sp. K1 [LRHL]
34234
34162
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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