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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483576 (114 seq.)
>W131223535
AUCD01000043
Bacillota
Atopococcus tabaci DSM 17538 [AUCD]
5647
5577
-
Gly
TCC
[ENA]
¡û
>W131223541
AUCD01000043
Bacillota
Atopococcus tabaci DSM 17538 [AUCD]
5060
4990
-
Gly
TCC
[ENA]
¡û
>W1711766236
MUYF01000003
Bacillota
Dolosigranulum pigrum [MUYF]
1474577
1474507
-
Gly
TCC
[ENA]
¡û
>W1711766264
MUYF01000003
Bacillota
Dolosigranulum pigrum [MUYF]
1077139
1077069
-
Gly
TCC
[ENA]
¡û
>W1712017260
NESR01000006
Bacillota
Kurthia gibsonii [NESR]
573008
572935
-
Gly
TCC
[ENA]
¡û
>W1712017292
NESR01000013
Bacillota
Kurthia gibsonii [NESR]
202777
202850
+
Gly
TCC
[ENA]
¡û
>C171094271
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
494779
494849
+
Gly
TCC
-
¡û
>C171094278
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
495507
495577
+
Gly
TCC
-
¡û
>C171094298
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
1748205
1748275
+
Gly
TCC
-
¡û
>W141039218
ALWW01000002
Bacillota
Listeria fleischmannii LU2006-1 [ALWW]
52821
52892
+
Gly
TCC
[ENA]
¡û
>W141039232
ALWW01000022
Bacillota
Listeria fleischmannii LU2006-1 [ALWW]
968
1039
+
Gly
TCC
[ENA]
¡û
>W141053812
AOCG01000006
Bacillota
Listeria aquatica FSL S10-1188 [AOCG]
323124
323053
-
Gly
TCC
[ENA]
¡û
>W141053838
AOCG01000015
Bacillota
Listeria aquatica FSL S10-1188 [AOCG]
1683
1754
+
Gly
TCC
[ENA]
¡û
>W141054137
AODF01000002
Bacillota
Listeria floridensis FSL S10-1187 [AODF]
39354
39284
-
Gly
TCC
[ENA]
¡û
>W141054156
AODF01000030
Bacillota
Listeria floridensis FSL S10-1187 [AODF]
8076
8006
-
Gly
TCC
[ENA]
¡û
>W141054578
AODM01000013
Bacillota
Listeria fleischmannii FSL S10-1203 [AODM]
1599
1670
+
Gly
TCC
[ENA]
¡û
>W141054590
AODM01000021
Bacillota
Listeria fleischmannii FSL S10-1203 [AODM]
44022
44093
+
Gly
TCC
[ENA]
¡û
>WENV180711528
ODFP01000123
[ODFP] human metagenome; G_DNA_Anterior nares
420
490
+
Gly
TCC
[ENA]
¢þ
>WENV180732172
ODGX01003490
[ODGX] human metagenome; G_DNA_Anterior nares
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180766307
ODIE01004538
[ODIE] human metagenome; G_DNA_Anterior nares
648
578
-
Gly
TCC
[ENA]
¢þ
>WENV180839001
ODKH01016559
[ODKH] human metagenome; G_DNA_Anterior nares
79
9
-
Gly
TCC
[ENA]
¢þ
>WENV180878899
ODLY01001442
[ODLY] human metagenome; G_DNA_Anterior nares
1279
1209
-
Gly
TCC
[ENA]
¢þ
>WENV180913515
ODSU01009346
[ODSU] human metagenome; G_DNA_Anterior nares
157
87
-
Gly
TCC
[ENA]
¢þ
>WENV180916236
ODTC01000338
[ODTC] human metagenome; G_DNA_Anterior nares
3025
2955
-
Gly
TCC
[ENA]
¢þ
>WENV180918160
ODTF01004939
[ODTF] human metagenome; G_DNA_Anterior nares
224
154
-
Gly
TCC
[ENA]
¢þ
>WENV180984675
ODVI01000832
[ODVI] human metagenome; G_DNA_Anterior nares
475
405
-
Gly
TCC
[ENA]
¢þ
>WENV181000304
ODVU01002973
[ODVU] human metagenome; G_DNA_Anterior nares
770
840
+
Gly
TCC
[ENA]
¢þ
>WENV181010186
ODWG01005257
[ODWG] human metagenome; G_DNA_Anterior nares
224
154
-
Gly
TCC
[ENA]
¢þ
>WENV181030342
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
94
164
+
Gly
TCC
[ENA]
¢þ
>WENV181032252
ODXL01001417
[ODXL] human metagenome; G_DNA_Anterior nares
732
802
+
Gly
TCC
[ENA]
¢þ
>WENV181131459
OEGC01000181
[OEGC] human metagenome; G_DNA_Anterior nares
9823
9893
+
Gly
TCC
[ENA]
¢þ
>W141194440
AYTB01000009
Bacillota
Kurthia huakuii LAM0618 [AYTB]
5503
5433
-
Gly
TCC
[ENA]
¡û
>W141194460
AYTB01000016
Bacillota
Kurthia huakuii LAM0618 [AYTB]
132
59
-
Gly
TCC
[ENA]
¡û
>W141239481
CAEP01000046
Bacillota
Kurthia sp. Dielmo [CAEP]
42044
41974
-
Gly
TCC
[ENA]
¡û
>W141239503
CAEP01000195
Bacillota
Kurthia sp. Dielmo [CAEP]
468
541
+
Gly
TCC
[ENA]
¡û
>W141239748
CAEU01000018
Bacillota
Kurthia massiliensis JC30 [CAEU]
184986
184913
-
Gly
TCC
[ENA]
¡û
>W141239790
CAEU01000075
Bacillota
Kurthia massiliensis JC30 [CAEU]
710
783
+
Gly
TCC
[ENA]
¡û
>W141239890
CAEV01000152
Bacillota
Clostridium senegalense JC122 [CAEV]
46
119
+
Gly
TCC
[ENA]
¡û
>W141239935
CAEW01000031
Bacillota
Kurthia senegalensis JC8E [CAEW]
86
13
-
Gly
TCC
[ENA]
¡û
>W141239969
CAEW01000058
Bacillota
Kurthia senegalensis JC8E [CAEW]
176
103
-
Gly
TCC
[ENA]
¡û
>WENV183724029
PEHZ01018337
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
180
110
-
Gly
TCC
[ENA]
¢þ
>WENV170644587
JMBW01035204
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
141
211
+
Gly
TCC
[ENA]
¢þ
>WENV170686317
LFRM01138751
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
655
725
+
Gly
TCC
[ENA]
¢þ
>C191126018
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2864932
2864862
-
Gly
TCC
-
¡û
>C191126025
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2864205
2864135
-
Gly
TCC
-
¡û
>C191126045
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1272028
1271958
-
Gly
TCC
-
¡û
>C191211368
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
1163914
1163987
+
Gly
TCC
-
¡û
>C191211411
LR134474
Bacillota
Kurthia zopfii NCTC404 [LR134474]
2939864
2939791
-
Gly
TCC
-
¡û
>W1910502553
FYBO01000002
Bacillota
Listeria sp. ILCC792 ILCC801 [FYBO]
53846
53775
-
Gly
TCC
[ENA]
¡û
>W1910502585
FYBO01000014
Bacillota
Listeria sp. ILCC792 ILCC801 [FYBO]
1779
1849
+
Gly
TCC
[ENA]
¡û
>W1910502608
FYBP01000002
Bacillota
Listeria sp. ILCC810 ILCC801 [FYBP]
51674
51603
-
Gly
TCC
[ENA]
¡û
>W1910502635
FYBP01000012
Bacillota
Listeria sp. ILCC810 ILCC801 [FYBP]
70619
70549
-
Gly
TCC
[ENA]
¡û
>W1910502663
FYBQ01000002
Bacillota
Listeria goaensis ILCC801 [FYBQ]
51917
51846
-
Gly
TCC
[ENA]
¡û
>W1910502684
FYBQ01000005
Bacillota
Listeria goaensis ILCC801 [FYBQ]
177455
177385
-
Gly
TCC
[ENA]
¡û
>W1910502712
FYBR01000002
Bacillota
Listeria sp. ILCC804 ILCC801 [FYBR]
51674
51603
-
Gly
TCC
[ENA]
¡û
>W1910502739
FYBR01000013
Bacillota
Listeria sp. ILCC804 ILCC801 [FYBR]
70619
70549
-
Gly
TCC
[ENA]
¡û
>W1910502786
FYBS01000005
Bacillota
Listeria sp. ILCC797 ILCC801 [FYBS]
1537
1607
+
Gly
TCC
[ENA]
¡û
>W1910502798
FYBS01000010
Bacillota
Listeria sp. ILCC797 ILCC801 [FYBS]
55997
56068
+
Gly
TCC
[ENA]
¡û
>W1910502824
FYBT01000003
Bacillota
Listeria goaensis ILCC801 [FYBT]
310537
310608
+
Gly
TCC
[ENA]
¡û
>W1910502841
FYBT01000004
Bacillota
Listeria goaensis ILCC801 [FYBT]
216583
216513
-
Gly
TCC
[ENA]
¡û
>W1910502870
FYBU01000002
Bacillota
Listeria sp. ILCC806 ILCC801 [FYBU]
301043
301114
+
Gly
TCC
[ENA]
¡û
>W1910502891
FYBU01000004
Bacillota
Listeria sp. ILCC806 ILCC801 [FYBU]
176558
176488
-
Gly
TCC
[ENA]
¡û
>W1910502919
FYBV01000002
Bacillota
Listeria sp. ILCC796 ILCC801 [FYBV]
46598
46527
-
Gly
TCC
[ENA]
¡û
>W1910502941
FYBV01000005
Bacillota
Listeria sp. ILCC796 ILCC801 [FYBV]
1537
1607
+
Gly
TCC
[ENA]
¡û
>W1910577290
JTFC01000003
Bacillota
Kurthia sp. 3B1D [JTFC]
68671
68601
-
Gly
TCC
[ENA]
¡û
>W1910577366
JTFC01000039
Bacillota
Kurthia sp. 3B1D [JTFC]
648
575
-
Gly
TCC
[ENA]
¡û
>W1910597393
LARY01000001
Bacillota
Listeria kieliensis Kiel-L1 [LARY]
272636
272707
+
Gly
TCC
[ENA]
¡û
>W1910597411
LARY01000001
Bacillota
Listeria kieliensis Kiel-L1 [LARY]
1150611
1150540
-
Gly
TCC
[ENA]
¡û
>W1910841887
NAJJ01000017
Bacillota
Dolosigranulum pigrum KPL1914 [NAJJ]
1465
1395
-
Gly
TCC
[ENA]
¡û
>W1910841914
NAJJ01000060
Bacillota
Dolosigranulum pigrum KPL1914 [NAJJ]
18371
18301
-
Gly
TCC
[ENA]
¡û
>W1910842118
NAQP01000021
Bacillota
Dolosigranulum pigrum KPL1939_CDC4792-99 [NAQP]
875
945
+
Gly
TCC
[ENA]
¡û
>W1910842147
NAQP01000046
Bacillota
Dolosigranulum pigrum KPL1939_CDC4792-99 [NAQP]
123210
123280
+
Gly
TCC
[ENA]
¡û
>W1910842177
NAQQ01000021
Bacillota
Dolosigranulum pigrum KPL1938_CDC4791-99 [NAQQ]
490
560
+
Gly
TCC
[ENA]
¡û
>W1910842202
NAQQ01000055
Bacillota
Dolosigranulum pigrum KPL1938_CDC4791-99 [NAQQ]
590
520
-
Gly
TCC
[ENA]
¡û
>W1910842230
NAQR01000034
Bacillota
Dolosigranulum pigrum KPL1937_CDC4199-99 [NAQR]
1844
1774
-
Gly
TCC
[ENA]
¡û
>W1910842251
NAQR01000050
Bacillota
Dolosigranulum pigrum KPL1937_CDC4199-99 [NAQR]
25598
25528
-
Gly
TCC
[ENA]
¡û
>W1910842286
NAQS01000042
Bacillota
Dolosigranulum pigrum KPL1934_CDC4709-98 [NAQS]
590
520
-
Gly
TCC
[ENA]
¡û
>W1910842299
NAQS01000043
Bacillota
Dolosigranulum pigrum KPL1934_CDC4709-98 [NAQS]
875
945
+
Gly
TCC
[ENA]
¡û
>W1910842341
NAQT01000016
Bacillota
Dolosigranulum pigrum KPL1933_CDC4545-98 [NAQT]
25675
25605
-
Gly
TCC
[ENA]
¡û
>W1910842356
NAQT01000019
Bacillota
Dolosigranulum pigrum KPL1933_CDC4545-98 [NAQT]
1715
1645
-
Gly
TCC
[ENA]
¡û
>W1910842390
NAQU01000047
Bacillota
Dolosigranulum pigrum KPL1932_CDC4420-98 [NAQU]
590
520
-
Gly
TCC
[ENA]
¡û
>W1910842407
NAQU01000060
Bacillota
Dolosigranulum pigrum KPL1932_CDC4420-98 [NAQU]
490
560
+
Gly
TCC
[ENA]
¡û
>W1910842438
NAQV01000027
Bacillota
Dolosigranulum pigrum KPL1931_CDC4294-98 [NAQV]
490
560
+
Gly
TCC
[ENA]
¡û
>W1910842461
NAQV01000065
Bacillota
Dolosigranulum pigrum KPL1931_CDC4294-98 [NAQV]
584
654
+
Gly
TCC
[ENA]
¡û
>W1910842479
NAQW01000027
Bacillota
Dolosigranulum pigrum KPL1930_CDC2949-98 [NAQW]
139
209
+
Gly
TCC
[ENA]
¡û
>W1910842493
NAQW01000034
Bacillota
Dolosigranulum pigrum KPL1930_CDC2949-98 [NAQW]
500
430
-
Gly
TCC
[ENA]
¡û
>W1910842544
NAQX01000036
Bacillota
Dolosigranulum pigrum KPL1922_CDC39-95 [NAQX]
139
209
+
Gly
TCC
[ENA]
¡û
>W1910842561
NAQX01000064
Bacillota
Dolosigranulum pigrum KPL1922_CDC39-95 [NAQX]
584
654
+
Gly
TCC
[ENA]
¡û
>W1910940576
NJAS01000001
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
1773
1846
+
Gly
TCC
[ENA]
¡û
>W1910940606
NJAS01000002
Bacillota
Rummeliibacillus pycnus DSM 15030 [NJAS]
2018895
2018968
+
Gly
TCC
[ENA]
¡û
>W1911676149
QGPZ01000008
Bacillota
Rummeliibacillus sp. TYF005 [QGPZ]
173
100
-
Gly
TCC
[ENA]
¡û
>W1911760417
QWUA01000029
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
181
108
-
Gly
TCC
[ENA]
¡û
>W1911760427
QWUA01000135
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
1773
1700
-
Gly
TCC
[ENA]
¡û
>W1911760457
QWUA01000157
Bacillota
Rummeliibacillus sp. POC4 [QWUA]
481
408
-
Gly
TCC
[ENA]
¡û
>W1911817979
QZNE01000010
Bacillota
Kurthia gibsonii B83 [QZNE]
115090
115163
+
Gly
TCC
[ENA]
¡û
>W1911817995
QZNE01000015
Bacillota
Kurthia gibsonii B83 [QZNE]
826
899
+
Gly
TCC
[ENA]
¡û
>W1810591615
QFVS01000005
Bacillota
Kurthia zopfii ATCC 33403 [QFVS]
109646
109719
+
Gly
TCC
[ENA]
¡û
>W1510001403
AZHO01000023
Bacillota
Listeria fleischmannii 1991 [AZHO]
31740
31669
-
Gly
TCC
[ENA]
¡û
>W1511403845
JTLM01000051
Bacillota
Carnobacterium sp. ZWU0011 [JTLM]
6457
6386
-
Gly
TCC
[ENA]
¡û
>C161053222
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
289016
289089
+
Gly
TCC
[Ensembl]
¡û
>C161053257
CP013217
Bacillota
Kurthia sp. 11kri321 [CP013217]
714236
714309
+
Gly
TCC
[Ensembl]
¡û
>C161077979
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
2522651
2522578
-
Gly
TCC
-
¡û
>C161078012
CP014806
Bacillota
Rummeliibacillus stabekisii PP9 [CP014806]
1947494
1947421
-
Gly
TCC
-
¡û
>W121009339
AGEG01000013
Bacillota
Facklamia languida CCUG 37842 [AGEG]
188444
188514
+
Gly
TCC
[ENA]
¡û
>W121009346
AGEG01000013
Bacillota
Facklamia languida CCUG 37842 [AGEG]
189127
189197
+
Gly
TCC
[ENA]
¡û
>W121009347
AGEG01000014
Bacillota
Facklamia languida CCUG 37842 [AGEG]
23
93
+
Gly
TCC
[ENA]
¡û
>W121019678
AGUG01000030
Bacillota
Listeria fleischmannii TTU M1-001 [AGUG]
12624
12695
+
Gly
TCC
[ENA]
¡û
>W1710516198
FNCK01000011
Bacillota
Facklamia miroungae [FNCK]
46336
46266
-
Gly
TCC
[ENA]
¡û
>W1710516205
FNCK01000011
Bacillota
Facklamia miroungae [FNCK]
45668
45598
-
Gly
TCC
[ENA]
¡û
>W1710542078
FNYW01000032
Bacillota
Alkalibacterium gilvum [FNYW]
24707
24637
-
Gly
TCC
[ENA]
¡û
>W1710545398
FOBL01000010
Bacillota
Alkalibacterium putridalgicola [FOBL]
81842
81772
-
Gly
TCC
[ENA]
¡û
>W1710564054
FOQE01000054
Bacillota
Pisciglobus halotolerans [FOQE]
6506
6435
-
Gly
TCC
[ENA]
¡û
>W1710582720
FQUF01000011
Bacillota
Atopostipes suicloacalis DSM 15692 [FQUF]
60479
60549
+
Gly
TCC
[ENA]
¡û
>W1710582750
FQUF01000030
Bacillota
Atopostipes suicloacalis DSM 15692 [FQUF]
27416
27346
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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