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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.48884 (44 seq.)
>W1710815677
LKKM01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
617594
617683
+
Ser
CGA
[ENA]
¡û
>W1711339571
MCAL01000115
Gammaproteobacteria
Pseudomonas sp. K35 [MCAL]
16894
16805
-
Ser
CGA
[ENA]
¡û
>W1711344778
MCNJ01000097
Gammaproteobacteria
Pseudomonas sp. CO183 [MCNJ]
27511
27422
-
Ser
CGA
[ENA]
¡û
>W131046447
AMSL01000036
Gammaproteobacteria
Stutzerimonas degradans Chol1 [AMSL]
22826
22737
-
Ser
CGA
[ENA]
¡û
>W1711421679
MHZI01000189
Gammaproteobacteria
Pseudomonadales bacterium GWC2_63_15 [MHZI]
27580
27491
-
Ser
CGA
[ENA]
¡û
>W1711658232
MQMM01000017
Gammaproteobacteria
Stutzerimonas degradans stutzeri [MQMM]
170144
170233
+
Ser
CGA
[ENA]
¡û
>W141054717
AOFQ01000055
Gammaproteobacteria
Stutzerimonas chloritidismutans AW-1 [AOFQ]
27470
27381
-
Ser
CGA
[ENA]
¡û
>W141075541
ATAR01000037
Gammaproteobacteria
Stutzerimonas stutzeri MF28 [ATAR]
60322
60411
+
Ser
CGA
[ENA]
¡û
>WENV181415558
OGCL01014473
[OGCL] hot springs metagenome; Hot spring water
846
935
+
Ser
CGA
[ENA]
¢þ
>WENV170136861
CENV01086406
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
264
+
Ser
CGA
[ENA]
¢þ
>WENV170201453
CEPQ01022041
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
343
254
-
Ser
CGA
[ENA]
¢þ
>WENV170221235
CEQA01032389
[CEQA] marine metagenome genome assembly TARA_041_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
834
745
-
Ser
CGA
[ENA]
¢þ
>WENV170345828
CETF01090663
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
127
216
+
Ser
CGA
[ENA]
¢þ
>WENV170705904
LNAP01000602
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
38352
38441
+
Ser
CGA
[ENA]
¢þ
>WENV170966931
MTEY01014504
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
366
455
+
Ser
CGA
[ENA]
¢þ
>C181155745
CP027543
Gammaproteobacteria
Stutzerimonas stutzeri DW2-1 [CP027543]
3596122
3596211
+
Ser
CGA
-
¡û
>C191177740
CP040460
Gammaproteobacteria
Stutzerimonas degradans PheN2 [CP040460]
2151214
2151125
-
Ser
CGA
-
¡û
>C191211858
LR134482
Gammaproteobacteria
Stutzerimonas stutzeri NCTC10475 [LR134482]
1459336
1459425
+
Ser
CGA
-
¡û
>W1910010957
BDJA01000002
Gammaproteobacteria
Pseudomonas sp. SCT [BDJA]
498009
498098
+
Ser
CGA
[ENA]
¡û
>W1810149407
PISM01000004
Gammaproteobacteria
Stutzerimonas kunmingensis BUN14 [PISM]
614522
614611
+
Ser
CGA
[ENA]
¡û
>W1810169370
PJJZ01000002
Gammaproteobacteria
Stutzerimonas stutzeri DSM 50227 [PJJZ]
403383
403472
+
Ser
CGA
[ENA]
¡û
>W1810224404
POUK01000004
Gammaproteobacteria
Stutzerimonas degradans DSM 50238 [POUK]
170936
171025
+
Ser
CGA
[ENA]
¡û
>W1810224535
POUM01000020
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 44592 [POUM]
1180
1091
-
Ser
CGA
[ENA]
¡û
>W1810224549
POUN01000001
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
445541
445630
+
Ser
CGA
[ENA]
¡û
>W1810224964
POUT01000008
Gammaproteobacteria
Stutzerimonas stutzeri 24a75 [POUT]
139256
139345
+
Ser
CGA
[ENA]
¡û
>W1810225003
POUU01000003
Gammaproteobacteria
Stutzerimonas stutzeri DSM 17088 [POUU]
349092
349003
-
Ser
CGA
[ENA]
¡û
>W1810225058
POUV01000005
Gammaproteobacteria
Stutzerimonas kunmingensis CCUG 36651 [POUV]
180636
180547
-
Ser
CGA
[ENA]
¡û
>W1810225120
POUW01000006
Gammaproteobacteria
Stutzerimonas stutzeri 28a3 [POUW]
273852
273941
+
Ser
CGA
[ENA]
¡û
>W1810242733
PPXG01000002
Gammaproteobacteria
Stutzerimonas stutzeri 24a13 [PPXG]
755038
755127
+
Ser
CGA
[ENA]
¡û
>W1810743390
QORI01000021
Gammaproteobacteria
Pseudomonas sp. SST3 [QORI]
25348
25437
+
Ser
CGA
[ENA]
¡û
>C151023527
CP007441
Gammaproteobacteria
Stutzerimonas stutzeri 28a24 [CP007441]
1519194
1519283
+
Ser
CGA
[Ensembl]
¡û
>W1510015267
BBQQ01000013
Gammaproteobacteria
Stutzerimonas degradans KF716 [BBQQ]
10383
10294
-
Ser
CGA
[ENA]
¡û
>W1510061185
CCYE01000019
Gammaproteobacteria
Stutzerimonas xanthomarina S11 [CCYE]
10888
10799
-
Ser
CGA
[ENA]
¡û
>W1511187062
JMFZ01000008
Gammaproteobacteria
Stutzerimonas degradans HMP271 [JMFZ]
168564
168653
+
Ser
CGA
[ENA]
¡û
>W1511429961
JUEC02000079
Gammaproteobacteria
[Pseudomonas] sp. BICA1-14 BICA1-14 [JUEC]
161321
161232
-
Ser
CGA
[ENA]
¡û
>W1511505145
JXJL01000013
Gammaproteobacteria
Stutzerimonas stutzeri ST-9 [JXJL]
34143
34054
-
Ser
CGA
[ENA]
¡û
>W1511517206
JXXD01000116
Gammaproteobacteria
Stutzerimonas stutzeri BAL361 [JXXD]
64727
64638
-
Ser
CGA
[ENA]
¡û
>W1511527596
JYHV01000025
Gammaproteobacteria
Stutzerimonas stutzeri NT0128 [JYHV]
21456
21367
-
Ser
CGA
[ENA]
¡û
>W1511564637
LADX01000141
Gammaproteobacteria
Pseudomonas sp. BRH_c35 [LADX]
9315
9404
+
Ser
CGA
[ENA]
¡û
>C121014983
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
3185496
3185407
-
Ser
CGA
[Ensembl]
¡û
>W121017947
AGSL01000025
Gammaproteobacteria
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156 [AGSL]
77119
77208
+
Ser
CGA
[ENA]
¡û
>C131001964
CP003071
Gammaproteobacteria
Stutzerimonas stutzeri RCH2 [CP003071]
1617134
1617223
+
Ser
CGA
[Ensembl]
¡û
>W1610679774
LKKM01000002
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
617594
617683
+
Ser
CGA
[ENA]
¡û
>W1710566061
FORS01000004
Gammaproteobacteria
Stutzerimonas kunmingensis [FORS]
239608
239519
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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