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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498851 (22 seq.)
>W141194203
AYSV01000097
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
13312
13239
-
Cys
GCA
[ENA]
¡û
>W141200400
AYXT01000013
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
321506
321579
+
Cys
GCA
[ENA]
¡û
>WENV170686993
LFRM01172640
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3910
3837
-
Cys
GCA
[ENA]
¢þ
>WENV170690640
LFRM01353467
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3392
3319
-
Cys
GCA
[ENA]
¢þ
>WENV170717407
LSQX01034474
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26570
26643
+
Cys
GCA
[ENA]
¢þ
>WENV170719366
LSQX01112172
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17842
17769
-
Cys
GCA
[ENA]
¢þ
>C181049097
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1266417
1266344
-
Cys
GCA
-
¡û
>C181049962
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1249632
1249559
-
Cys
GCA
-
¡û
>C181050036
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1232797
1232724
-
Cys
GCA
-
¡û
>C191208085
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1291336
1291263
-
Cys
GCA
-
¡û
>W141562690
JHZJ01000009
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
300200
300127
-
Cys
GCA
[ENA]
¡û
>W1910225801
FMSW01000009
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
243548
243475
-
Cys
GCA
[ENA]
¡û
>W1910891692
NEXS01000009
Betaproteobacteria
Advenella sp. S44 [NEXS]
448062
448135
+
Cys
GCA
[ENA]
¡û
>W1810701960
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
204428
204501
+
Cys
GCA
[ENA]
¡û
>C151004950
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
1252009
1251936
-
Cys
GCA
[Ensembl]
¡û
>C151046307
CP009238
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [CP009238]
1453472
1453545
+
Cys
GCA
[Ensembl]
¡û
>W1511350696
JRMO01000002
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
208083
208010
-
Cys
GCA
[ENA]
¡û
>C11122636
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
242742
242669
-
Cys
GCA
[Ensembl]
¡û
>C121009948
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1321946
1321873
-
Cys
GCA
[Ensembl]
¡û
>W1610606569
LFTA01000103
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
3910
3837
-
Cys
GCA
[ENA]
¡û
>W1710004121
AFWK01000061
Betaproteobacteria
Basilea psittacipulmonis DSM 24701 [AFWK]
3952
3879
-
Cys
GCA
[ENA]
¡û
>W1710727856
LFTA01000103
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
3910
3837
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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