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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5834 (33 seq.)
>W1711174294
LWED01000009
Gammaproteobacteria
Shewanella baltica [LWED]
73253
73159
-
SeC(p)
TCA
[ENA]
¡û
>W1711621631
MPDG02000007
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
85762
85856
+
SeC(p)
TCA
[ENA]
¡û
>W1712080433
NGZL01000008
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
77173
77267
+
SeC(p)
TCA
[ENA]
¡û
>C022402
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
122049
121959
-
SeC
TCA
[Ensembl]
¡û
>C022505
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
119399
119309
-
SeC
TCA
[Ensembl]
¡û
>C023006
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
117643
117553
-
SeC
TCA
[Ensembl]
¡û
>WENV181201166
OERM01005328
[OERM] metagenome; water of meat washing
400
306
-
SeC
TCA
[ENA]
¢þ
>C08008704
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
130576
130482
-
SeC
TCA
[Ensembl]
¡û
>C08008808
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
133869
133775
-
SeC
TCA
[Ensembl]
¡û
>ENV08001570
ABNJ01014523
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
121
27
-
SeC
TCA
[ENA]
¡û
>w018611
AATK01000004
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
85980
86074
+
SeC
TCA
[ENA]
¡û
>w024879
AAZC01000008
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
88527
88621
+
SeC
TCA
[ENA]
¡û
>w026281
ABAU01000002
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
112095
112189
+
SeC
TCA
[ENA]
¡û
>C181063034
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
122260
122166
-
SeC
TCA
-
¡û
>C181075082
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
2056376
2056282
-
SeC
TCA
-
¡û
>C181164554
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
2026023
2025929
-
SeC
TCA
-
¡û
>C181167974
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
131854
131760
-
SeC
TCA
-
¡û
>W141520044
JGVI01000035
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53974
53880
-
SeC(p)
TCA
[ENA]
¡û
>C191206516
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
132606
132512
-
Sec
TCA
-
¡û
>W09104582
AALX01000007
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
75471
75377
-
SeC
TCA
[ENA]
¡û
>C09109239
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
130575
130481
-
SeC
TCA
[Ensembl]
¡û
>W1910913776
NHRI01000008
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
122206
122300
+
Sec
TCA
[ENA]
¡û
>W1911551683
OXJV01000018
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
184972
185066
+
Sec
TCA
[ENA]
¡û
>W1911710061
QPQT01000012
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
85276
85370
+
Sec
TCA
[ENA]
¡û
>W1810423041
PYSG01000003
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
455492
455398
-
Sec
TCA
[ENA]
¡û
>W1810721605
QNSC01000018
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
62762
62668
-
Sec
TCA
[ENA]
¡û
>W10119061
ADVH01000011
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
84126
84032
-
SeC
TCA
[ENA]
¡û
>C11119660
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
133558
133464
-
SeC
TCA
[Ensembl]
¡û
>W1511403556
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1949796
1949702
-
SeC
TCA
[ENA]
¡û
>W11125233
ADVH01000011
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
84126
84032
-
SeC(p)
TCA
[ENA]
¡û
>W11178425
AGEX01000002
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
624938
624844
-
SeC(p)
TCA
[ENA]
¡û
>W1610982607
LWED01000009
Gammaproteobacteria
Shewanella baltica [LWED]
73253
73159
-
SeC(p)
TCA
[ENA]
¡û
>W1710597926
FTNN01000003
Gammaproteobacteria
Shewanella morhuae [FTNN]
343589
343683
+
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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