This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59254 (43 seq.)
>A171002640
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1592282
1592196
-
Leu
CAA
-
¡û
>A171003750
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
1620293
1620208
-
Leu
CAA
-
¡û
>A171003973
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1603715
1603629
-
Leu
CAA
-
¡û
>A171005809
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
3244464
3244380
-
Leu
CAA
-
¡û
>A171006686
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
624233
624317
+
Leu
CAA
-
¡û
>A171006728
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
651417
651501
+
Leu
CAA
-
¡û
>WENV180318189
OBKM01000053
[OBKM] metagenome; water
11817
11901
+
Leu
CAA
[ENA]
¢þ
>WENV180318322
OBKM01000397
[OBKM] metagenome; water
7791
7877
+
Leu
CAA
[ENA]
¢þ
>WENV170009051
APHM01020960
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4
90
+
Leu
CAA
[ENA]
¢þ
>At0776
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
921485
921402
-
Leu
CAA
[Ensembl]
¡û
>WENV170660938
JXWU01064981
[JXWU] soil metagenome; rice field; organic control Plot
275
189
-
Leu
CAA
[ENA]
¢þ
>WENV170680310
LFCJ01007893
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5953
5867
-
Leu
CAA
[ENA]
¢þ
>WENV170681229
LFFM01000235
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
26724
26810
+
Leu
CAA
[ENA]
¢þ
>WENV170702923
LKMJ01004861
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8598
8514
-
Leu
CAA
[ENA]
¢þ
>WENV170703220
LKMJ01008115
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4521
4607
+
Leu
CAA
[ENA]
¢þ
>W1910006668
BBJN01000030
Euryarchaeota
Halolamina rubra CBA1107 [BBJN]
118151
118235
+
Leu
CAA
[ENA]
¡û
>W1910175083
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
50915
50999
+
Leu
CAA
[ENA]
¡û
>W1910193800
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
2037752
2037667
-
Leu
CAA
[ENA]
¡û
>W1910228397
FNOF01000011
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
108339
108255
-
Leu
CAA
[ENA]
¡û
>W1910230602
FOXI01000001
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
206249
206333
+
Leu
CAA
[ENA]
¡û
>W1910281635
FQWV01000006
Euryarchaeota
Halobaculum gomorrense DSM 9297 [FQWV]
60417
60503
+
Leu
CAA
[ENA]
¡û
>W1910617600
LIUF01000003
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
470799
470713
-
Leu
CAA
[ENA]
¡û
>W1910828007
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
1018549
1018635
+
Leu
CAA
[ENA]
¡û
>W1911493142
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
833557
833473
-
Leu
CAA
[ENA]
¡û
>W1911709164
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2605565
2605651
+
Leu
CAA
[ENA]
¡û
>W1911709472
QPLN01000004
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
177218
177302
+
Leu
CAA
[ENA]
¡û
>W1911709610
QPLQ01000004
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
251095
251011
-
Leu
CAA
[ENA]
¡û
>W1911709884
QPMJ01000002
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
331644
331558
-
Leu
CAA
[ENA]
¡û
>W1911770027
QXIK01000004
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
195041
195125
+
Leu
CAA
[ENA]
¡û
>W1610012818
AOIU01000028
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
4240
4324
+
Leu
CAA
[ENA]
¡û
>W1610014150
AOLQ01000065
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
298087
298003
-
Leu
CAA
[ENA]
¡û
>W1610014185
AOLR01000017
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
15923
16009
+
Leu
CAA
[ENA]
¡û
>W1610014243
AOLS01000102
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
39669
39755
+
Leu
CAA
[ENA]
¡û
>W1610014267
AOLW01000015
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
170742
170828
+
Leu
CAA
[ENA]
¡û
>W1610014308
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
150783
150869
+
Leu
CAA
[ENA]
¡û
>W1610014385
AOLY01000033
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
51346
51432
+
Leu
CAA
[ENA]
¡û
>W1610018996
AQZY01000021
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
28091
28176
+
Leu
CAA
[ENA]
¡û
>W1610019253
ARQB01000353
Euryarchaeota
Halorubrum sp. J07HR59 [ARQB]
9
95
+
Leu
CAA
[ENA]
¡û
>W1610020314
ASGZ01000062
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
19619
19535
-
Leu
CAA
[ENA]
¡û
>W1610024358
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
445098
445183
+
Leu
CAA
[ENA]
¡û
>W1610061925
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
916891
916807
-
Leu
CAA
[ENA]
¡û
>W1610061946
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2018544
2018630
+
Leu
CAA
[ENA]
¡û
>W1610881025
LRHL01000023
Euryarchaeota
Haloarcula sp. K1 [LRHL]
475467
475381
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK