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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59431 (13 seq.)
>A171000333
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1401056
1401143
+
Ser
GCT
-
¡û
>A171002783
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1068927
1068841
-
Ser
GCT
-
¡û
>A171002960
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
314476
314391
-
Ser
GCT
-
¡û
>A178000566
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
1434554
1434456
-
Ser
GCT
-
¡û
>WENV180014246
FPIC01113168
[FPIC] soil metagenome; Soil
84
-1
-
Ser
GCT
[ENA]
¢þ
>At0210
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
2007730
2007814
+
Ser
GCT
[Ensembl]
¡û
>At0245
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1582747
1582831
+
Ser
GCT
[Ensembl]
¡û
>At0314
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
430352
430268
-
Ser
GCT
[Ensembl]
¡û
>At0333
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
543576
543663
+
Ser
GCT
[Ensembl]
¡û
>WENV170574145
FLYM01008784
[FLYM] hot springs metagenome; Sediment
1860
1947
+
Ser
GCT
[ENA]
¢þ
>W1911075109
NMUE01000001
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
115661
115747
+
Ser
GCT
[ENA]
¡û
>W1911075136
NMUF01000008
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
75091
75177
+
Ser
GCT
[ENA]
¡û
>W1610000624
ABIO01000002
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
259620
259707
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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