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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59960 (40 seq.)
>W1711174295
LWED01000011
Gammaproteobacteria
Shewanella baltica [LWED]
36756
36670
-
Leu
CAA
[ENA]
¡û
>W1711621602
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
316724
316810
+
Leu
CAA
[ENA]
¡û
>C020667
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
4187715
4187629
-
Leu
CAA
[Ensembl]
¡û
>C022564
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
3879529
3879615
+
Leu
CAA
[Ensembl]
¡û
>C023328
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
863988
863902
-
Leu
CAA
[Ensembl]
¡û
>w026332
ABAU01000077
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
9189
9277
+
Leu
CAA
[ENA]
¡û
>w024898
AAZC01000040
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
29171
29083
-
Leu
CAA
[ENA]
¡û
>w022909
AAWY01000044
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
22418
22330
-
Leu
CAA
[ENA]
¡û
>w018636
AATK01000031
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
17832
17920
+
Leu
CAA
[ENA]
¡û
>C08008610
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
931640
931726
+
Leu
CAA
[Ensembl]
¡û
>C08008716
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
970214
970300
+
Leu
CAA
[Ensembl]
¡û
>ENV08001595
ABNJ01058967
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
10
96
+
Leu
CAA
[ENA]
¡û
>ENV08001598
ABNJ01066172
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
7
93
+
Leu
CAA
[ENA]
¡û
>ENV08001601
ABNJ01071777
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
91
5
-
Leu
CAA
[ENA]
¡û
>ENV08001604
ABNJ01074247
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
6
92
+
Leu
CAA
[ENA]
¡û
>ENV08001622
ABNJ01122532
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
92
6
-
Leu
CAA
[ENA]
¡û
>WENV170022345
BCQK01006128
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1616
1702
+
Leu
CAA
[ENA]
¢þ
>C181016805
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
1500768
1500854
+
Leu
CAA
-
¡û
>C181075002
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
2771607
2771693
+
Leu
CAA
-
¡û
>C181164559
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
997119
997033
-
Leu
CAA
-
¡û
>C181167875
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
827343
827429
+
Leu
CAA
-
¡û
>C191206421
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
799126
799212
+
Leu
CAA
-
¡û
>W09102879
AAIO01000022
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
18366
18452
+
Leu
CAA
[ENA]
¡û
>W09103967
AALB01000067
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
5763
5849
+
Leu
CAA
[ENA]
¡û
>W09104306
AALN01000046
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
18780
18866
+
Leu
CAA
[ENA]
¡û
>C09109138
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
949346
949432
+
Leu
CAA
[Ensembl]
¡û
>W1810721607
QNSC01000024
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
30114
30200
+
Leu
CAA
[ENA]
¡û
>W10119067
ADVH01000022
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
67668
67754
+
Leu
CAA
[ENA]
¡û
>W10126074
AECY01000007
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
29197
29111
-
Leu
CAA
[ENA]
¡û
>W10126427
AEDE01000008
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
28692
28606
-
Leu
CAA
[ENA]
¡û
>C11119371
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
982421
982507
+
Leu
CAA
[Ensembl]
¡û
>C11119513
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
4282156
4282070
-
Leu
CAA
[Ensembl]
¡û
>C11119570
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
968317
968403
+
Leu
CAA
[Ensembl]
¡û
>C11121594
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
856667
856581
-
Leu
CAA
[Ensembl]
¡û
>W11125239
ADVH01000022
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
67668
67754
+
Leu
CAA
[ENA]
¡û
>W11133335
AECY01000007
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
29197
29111
-
Leu
CAA
[ENA]
¡û
>W11133688
AEDE01000008
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
28692
28606
-
Leu
CAA
[ENA]
¡û
>W11169873
AFOZ01000013
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
26306
26220
-
Leu
CAA
[ENA]
¡û
>W11178452
AGEX01000005
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
354299
354213
-
Leu
CAA
[ENA]
¡û
>W1610982608
LWED01000011
Gammaproteobacteria
Shewanella baltica [LWED]
36756
36670
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK