This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62195 (46 seq.)
>W1710806143
LKAQ01000005
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
247047
247133
+
Leu
GAG
[ENA]
¡û
>W131224583
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
2383
2297
-
Leu
GAG
[ENA]
¡û
>W131224584
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
470
384
-
Leu
GAG
[ENA]
¡û
>W131224819
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
75302
75216
-
Leu
GAG
[ENA]
¡û
>W131224820
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
75083
74997
-
Leu
GAG
[ENA]
¡û
>W131224821
AUDB01000010
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
74563
74477
-
Leu
GAG
[ENA]
¡û
>W131224840
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
360417
360503
+
Leu
GAG
[ENA]
¡û
>W131224841
AUDC01000008
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
361318
361404
+
Leu
GAG
[ENA]
¡û
>WENV180043360
LQAH01036611
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
104
190
+
Leu
GAG
[ENA]
¢þ
>WENV180589497
OCOR01086390
[OCOR] marine metagenome; ENVO:00002042
10
96
+
Leu
GAG
[ENA]
¢þ
>WENV183706937
PDWI01006005
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15322
15408
+
Leu
GAG
[ENA]
¢þ
>WENV183747272
PPCM01000637
[PPCM] marine sediment metagenome; marine sediment
384
298
-
Leu
GAG
[ENA]
¢þ
>WENV183747273
PPCM01000637
[PPCM] marine sediment metagenome; marine sediment
92
6
-
Leu
GAG
[ENA]
¢þ
>WENV183747509
PPCM01003623
[PPCM] marine sediment metagenome; marine sediment
3894
3980
+
Leu
GAG
[ENA]
¢þ
>WENV183747510
PPCM01003623
[PPCM] marine sediment metagenome; marine sediment
4186
4272
+
Leu
GAG
[ENA]
¢þ
>WENV183747711
PPCM01020378
[PPCM] marine sediment metagenome; marine sediment
469
555
+
Leu
GAG
[ENA]
¢þ
>WENV170418951
CEUM01083224
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
171
-
Leu
GAG
[ENA]
¢þ
>WENV170437797
CEUU01068020
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
261
+
Leu
GAG
[ENA]
¢þ
>WENV170440341
CEUV01090466
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
259
+
Leu
GAG
[ENA]
¢þ
>WENV170469736
CEVF01138400
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
874
960
+
Leu
GAG
[ENA]
¢þ
>WENV170645360
JMSV01000834
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
573
659
+
Leu
GAG
[ENA]
¢þ
>WENV170645390
JMSV01002390
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
874
960
+
Leu
GAG
[ENA]
¢þ
>WENV170896329
MDTD01093894
[MDTD] marine metagenome; seawater
37041
37127
+
Leu
GAG
[ENA]
¢þ
>WENV170896330
MDTD01093894
[MDTD] marine metagenome; seawater
37253
37339
+
Leu
GAG
[ENA]
¢þ
>C181227017
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440849
440763
-
Leu
GAG
-
¡û
>C181227018
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440637
440551
-
Leu
GAG
-
¡û
>W09118012
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
107732
107818
+
Leu
GAG
[ENA]
¡û
>W09118013
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
107950
108036
+
Leu
GAG
[ENA]
¡û
>W09118014
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
108739
108825
+
Leu
GAG
[ENA]
¡û
>W09118015
ACCN01000007
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
110099
110185
+
Leu
GAG
[ENA]
¡û
>C141011943
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2718599
2718513
-
Leu
GAG
-
¡û
>C141011944
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
2718380
2718294
-
Leu
GAG
-
¡û
>C09104203
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2121324
2121410
+
Leu
GAG
[Ensembl]
¡û
>C09104204
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2121542
2121628
+
Leu
GAG
[Ensembl]
¡û
>C09104205
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2122331
2122417
+
Leu
GAG
[Ensembl]
¡û
>C09104206
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2123691
2123777
+
Leu
GAG
[Ensembl]
¡û
>W1911738004
QTZO01000003
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
139300
139214
-
Leu
GAG
[ENA]
¡û
>W10111359
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>C11106879
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1736751
1736665
-
Leu
GAG
[Ensembl]
¡û
>W11114302
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>W11149100
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
496737
496823
+
Leu
GAG
[ENA]
¡û
>C121008968
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
496737
496823
+
Leu
GAG
[Ensembl]
¡û
>C161068275
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2679598
2679512
-
Leu
GAG
[Ensembl]
¡û
>C131017911
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
475981
476067
+
Leu
GAG
[Ensembl]
¡û
>C131018125
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2718599
2718513
-
Leu
GAG
[Ensembl]
¡û
>C131018126
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
2718380
2718294
-
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK