This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62260 (12 seq.)
>C171057470
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
442401
442315
-
Leu
TAA
-
¡û
>W131169217
AREO01000006
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
60314
60228
-
Leu
TAA
[ENA]
¡û
>WENV170690280
LFRM01333450
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
421
507
+
Leu
TAA
[ENA]
¢þ
>WENV170691293
LFRM01391235
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
317
403
+
Leu
TAA
[ENA]
¢þ
>C181185412
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1646887
1646801
-
Leu
TAA
-
¡û
>C191108215
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
269777
269863
+
Leu
TAA
-
¡û
>C191122106
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
158861
158775
-
Leu
TAA
-
¡û
>C191211026
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
296236
296322
+
Leu
TAA
-
¡û
>W09128001
ACLK01000024
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
24886
24972
+
Leu
TAA
[ENA]
¡û
>C151007181
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1100126
1100040
-
Leu
TAA
[Ensembl]
¡û
>C11108874
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1580413
1580327
-
Leu
TAA
[Ensembl]
¡û
>C161078619
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
286095
286181
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK