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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655018 (115 seq.)
>W1710868122
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
616392
616318
-
Glu
TTC
[ENA]
¡û
>W1710870182
LMKH01000035
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
318476
318402
-
Glu
TTC
[ENA]
¡û
>W1710870346
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
337604
337678
+
Glu
TTC
[ENA]
¡û
>W1710870476
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
685471
685397
-
Glu
TTC
[ENA]
¡û
>W1710870742
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
194346
194272
-
Glu
TTC
[ENA]
¡û
>W1710870771
LMKU01000003
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
161390
161464
+
Glu
TTC
[ENA]
¡û
>W1710870872
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
20456
20382
-
Glu
TTC
[ENA]
¡û
>W1710870947
LMKX01000008
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
480917
480843
-
Glu
TTC
[ENA]
¡û
>W1710871034
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1065622
1065548
-
Glu
TTC
[ENA]
¡û
>W1710871120
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
1959359
1959433
+
Glu
TTC
[ENA]
¡û
>W1710871158
LMLC01000001
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
183131
183205
+
Glu
TTC
[ENA]
¡û
>W1710871236
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
969413
969339
-
Glu
TTC
[ENA]
¡û
>W1710871320
LMLF01000006
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
416217
416291
+
Glu
TTC
[ENA]
¡û
>W1710872106
LMLS01000005
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
132945
132871
-
Glu
TTC
[ENA]
¡û
>W1710872321
LMLW01000012
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
122465
122539
+
Glu
TTC
[ENA]
¡û
>W1710876494
LMPG01000015
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
2269
2195
-
Glu
TTC
[ENA]
¡û
>W1710876731
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2714471
2714545
+
Glu
TTC
[ENA]
¡û
>W1710877235
LMPX01000004
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
419384
419310
-
Glu
TTC
[ENA]
¡û
>W1710877978
LMQO01000001
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
1261061
1261135
+
Glu
TTC
[ENA]
¡û
>W1710878054
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
190639
190565
-
Glu
TTC
[ENA]
¡û
>W1710879479
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
468406
468480
+
Glu
TTC
[ENA]
¡û
>C171095085
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
756411
756337
-
Glu
TTC
-
¡û
>W131098613
AORY01000001
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
307170
307096
-
Glu
TTC
[ENA]
¡û
>W131213858
ATTI01000001
Alphaproteobacteria
Sphingomonas phyllosphaerae 5.2 [ATTI]
1618641
1618567
-
Glu
TTC
[ENA]
¡û
>W131214362
ATTZ01000153
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-C18 [ATTZ]
25186
25112
-
Glu
TTC
[ENA]
¡û
>W131219254
ATYK01000002
Alphaproteobacteria
Sphingomonas phyllosphaerae FA2 [ATYK]
877044
877118
+
Glu
TTC
[ENA]
¡û
>W131237327
AUNZ01000186
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-D21 [AUNZ]
4908
4982
+
Glu
TTC
[ENA]
¡û
>WENV180105059
OAPD01003057
[OAPD] marine metagenome; 2010
793
867
+
Glu
TTC
[ENA]
¢þ
>WENV181375064
OFQY01043926
[OFQY] wastewater metagenome; Exp Tend VB 10WW
766
692
-
Glu
TTC
[ENA]
¢þ
>WENV181379671
OFRD01005662
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1306
1380
+
Glu
TTC
[ENA]
¢þ
>WENV181384221
OFRH01038200
[OFRH] wastewater metagenome; Exp Tend NO 100WW
438
512
+
Glu
TTC
[ENA]
¢þ
>WENV181385473
OFRI01096599
[OFRI] wastewater metagenome; Exp Tend VB 90WW
335
261
-
Glu
TTC
[ENA]
¢þ
>WENV181386108
OFRL01000666
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
7979
7905
-
Glu
TTC
[ENA]
¢þ
>WENV181400799
OFSF01025427
[OFSF] wastewater metagenome; Exp Tend VB 100WW
432
358
-
Glu
TTC
[ENA]
¢þ
>WENV183745114
PJUL01002534
[PJUL] feces metagenome; Chicken feces enriched on filter paper
2712
2786
+
Glu
TTC
[ENA]
¢þ
>ENV08002071
ABOL01087648
mosquito metagenome; viral fraction from mixed species mosquitoes collected in Mission Valley in San Diego, CA
37
111
+
Glu
TTC
[ENA]
¡û
>WENV170577569
FSSH01000207
[FSSH] freshwater metagenome; drinking water
47405
47331
-
Glu
TTC
[ENA]
¢þ
>WENV170577722
FSSH01000608
[FSSH] freshwater metagenome; drinking water
18125
18051
-
Glu
TTC
[ENA]
¢þ
>WENV170711243
LNFM01004200
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22489
22415
-
Glu
TTC
[ENA]
¢þ
>W141484727
JFYV01000030
Alphaproteobacteria
Sphingomonas sp. RIT328 [JFYV]
3189
3115
-
Glu
TTC
[ENA]
¡û
>C181108657
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
535733
535659
-
Glu
TTC
-
¡û
>C181192067
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1633762
1633688
-
Glu
TTC
-
¡û
>C191154750
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
2189566
2189640
+
Glu
TTC
-
¡û
>C191163754
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
3616978
3617052
+
Glu
TTC
-
¡û
>W141779886
JOOE01000005
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
14050
14124
+
Glu
TTC
[ENA]
¡û
>W141801029
JPDP01000244
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
3070
3144
+
Glu
TTC
[ENA]
¡û
>W141805151
JPJC01000006
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
18790
18716
-
Glu
TTC
[ENA]
¡û
>W1810090355
PGFU01000009
Alphaproteobacteria
Sphingomonas carotinifaciens B093034 [PGFU]
41006
40932
-
Glu
TTC
[ENA]
¡û
>SRA1003032
SRR002326.162748
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
158
232
+
Glu
TTC
[SRA]
>SRA1003304
SRR002326.376893
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
112
186
+
Glu
TTC
[SRA]
>SRA1004325
SRR002328.277431
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
125
51
-
Glu
TTC
[SRA]
>W1810463396
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
414855
414929
+
Glu
TTC
[ENA]
¡û
>W1810475070
QAIS01000549
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
447
373
-
Glu
TTC
[ENA]
¡û
>W1810476712
QAOF01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
47901
47827
-
Glu
TTC
[ENA]
¡û
>W1810476766
QAOG01000003
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
477430
477356
-
Glu
TTC
[ENA]
¡û
>W1810486885
QAYE01000003
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
94390
94316
-
Glu
TTC
[ENA]
¡û
>W1810577300
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
1156139
1156213
+
Glu
TTC
[ENA]
¡û
>SRA1014159
SRR023845.22356
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
138
212
+
Glu
TTC
[SRA]
>SRA1014284
SRR023845.70653
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
115
41
-
Glu
TTC
[SRA]
>SRA1014398
SRR023845.120628
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
54
128
+
Glu
TTC
[SRA]
>SRA1014521
SRR023845.179812
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
89
-
Glu
TTC
[SRA]
>SRA1015228
SRR023845.508007
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
32
-
Glu
TTC
[SRA]
>SRA1015307
SRR023846.11628
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
165
+
Glu
TTC
[SRA]
>SRA1015392
SRR023846.40535
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
205
+
Glu
TTC
[SRA]
>SRA1015528
SRR023846.98457
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
118
-
Glu
TTC
[SRA]
>SRA1015554
SRR023846.110187
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
146
+
Glu
TTC
[SRA]
>SRA1015644
SRR023846.143984
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
192
118
-
Glu
TTC
[SRA]
>SRA1015703
SRR023846.164979
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
146
+
Glu
TTC
[SRA]
>SRA1015751
SRR023846.181430
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
221
+
Glu
TTC
[SRA]
>SRA1015906
SRR023846.252350
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
114
40
-
Glu
TTC
[SRA]
>SRA1015950
SRR023846.279410
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
146
220
+
Glu
TTC
[SRA]
>SRA1016011
SRR023846.312029
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
237
163
-
Glu
TTC
[SRA]
>SRA1016208
SRR023846.403411
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
146
+
Glu
TTC
[SRA]
>SRA1016284
SRR023846.435684
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
146
+
Glu
TTC
[SRA]
>SRA1016374
SRR023846.469928
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
146
+
Glu
TTC
[SRA]
>SRA1016442
SRR023846.499061
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
221
+
Glu
TTC
[SRA]
>C151054367
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
1455804
1455730
-
Glu
TTC
[Ensembl]
¡û
>C151073222
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
1233636
1233562
-
Glu
TTC
[Ensembl]
¡û
>W1510757024
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
155991
155917
-
Glu
TTC
[ENA]
¡û
>W1511352560
JROH01000012
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
40480
40554
+
Glu
TTC
[ENA]
¡û
>W1511357043
JRVI01000016
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
19080
19006
-
Glu
TTC
[ENA]
¡û
>W1511390147
JSXI01000037
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
2822
2748
-
Glu
TTC
[ENA]
¡û
>W1511519406
JXZE01000006
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
83215
83289
+
Glu
TTC
[ENA]
¡û
>W121031766
AHHA01000032
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
53026
52952
-
Glu
TTC
[ENA]
¡û
>W121033217
AHIR01000003
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
29492
29418
-
Glu
TTC
[ENA]
¡û
>W121033298
AHIS01000101
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
86373
86447
+
Glu
TTC
[ENA]
¡û
>W121046807
AIDW01000015
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
277229
277155
-
Glu
TTC
[ENA]
¡û
>W1610592872
LDTB01000051
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
10267
10341
+
Glu
TTC
[ENA]
¡û
>W1610730468
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
616392
616318
-
Glu
TTC
[ENA]
¡û
>W1610732528
LMKH01000035
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
318476
318402
-
Glu
TTC
[ENA]
¡û
>W1610732692
LMKL01000001
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
337604
337678
+
Glu
TTC
[ENA]
¡û
>W1610732822
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
685471
685397
-
Glu
TTC
[ENA]
¡û
>W1610733088
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
194346
194272
-
Glu
TTC
[ENA]
¡û
>W1610733117
LMKU01000003
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
161390
161464
+
Glu
TTC
[ENA]
¡û
>W1610733218
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
20456
20382
-
Glu
TTC
[ENA]
¡û
>W1610733293
LMKX01000008
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
480917
480843
-
Glu
TTC
[ENA]
¡û
>W1610733380
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1065622
1065548
-
Glu
TTC
[ENA]
¡û
>W1610733466
LMLB01000001
Alphaproteobacteria
Sphingomonas sp. Leaf33 [LMLB]
1959359
1959433
+
Glu
TTC
[ENA]
¡û
>W1610733504
LMLC01000001
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
183131
183205
+
Glu
TTC
[ENA]
¡û
>W1610733582
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
969413
969339
-
Glu
TTC
[ENA]
¡û
>W1610733666
LMLF01000006
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
416217
416291
+
Glu
TTC
[ENA]
¡û
>W1610734452
LMLS01000005
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
132945
132871
-
Glu
TTC
[ENA]
¡û
>W1610734667
LMLW01000012
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
122465
122539
+
Glu
TTC
[ENA]
¡û
>W1610738840
LMPG01000015
Alphaproteobacteria
Sphingomonas sp. Leaf343 [LMPG]
2269
2195
-
Glu
TTC
[ENA]
¡û
>W1610739077
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2714471
2714545
+
Glu
TTC
[ENA]
¡û
>W1610739581
LMPX01000004
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
419384
419310
-
Glu
TTC
[ENA]
¡û
>W1610740324
LMQO01000001
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
1261061
1261135
+
Glu
TTC
[ENA]
¡û
>W1610740400
LMQP01000003
Alphaproteobacteria
Sphingomonas sp. Leaf412 [LMQP]
190639
190565
-
Glu
TTC
[ENA]
¡û
>W1610741825
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
468406
468480
+
Glu
TTC
[ENA]
¡û
>W1710083082
BDJB01000004
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
120750
120824
+
Glu
TTC
[ENA]
¡û
>W1710514951
FNBI01000010
Alphaproteobacteria
Sphingomonas carotinifaciens S7-754 [FNBI]
89740
89814
+
Glu
TTC
[ENA]
¡û
>W1710543477
FNZZ01000006
Alphaproteobacteria
Sphingomonas palmae JS21-1 [FNZZ]
84441
84515
+
Glu
TTC
[ENA]
¡û
>W1710571538
FOVZ01000005
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
314107
314033
-
Glu
TTC
[ENA]
¡û
>W1710573580
FOXP01000001
Alphaproteobacteria
Sphingomonas rubra [FOXP]
6771
6697
-
Glu
TTC
[ENA]
¡û
>W1710712152
LDTB01000051
Alphaproteobacteria
Sphingomonas endophytica [LDTB]
10267
10341
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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