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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655402 (69 seq.)
>W1710809585
LKEQ01000001
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
9349
9277
-
Asn
GTT
[ENA]
¡û
>W1711055040
LRUH01000015
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
37332
37404
+
Asn
GTT
[ENA]
¡û
>W1711088459
LSYX01000124
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
4097
4025
-
Asn
GTT
[ENA]
¡û
>W1711088487
LSYY01000134
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
16534
16606
+
Asn
GTT
[ENA]
¡û
>W1711258811
LYUV01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
4513
4441
-
Asn
GTT
[ENA]
¡û
>W1711258845
LYUW01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
30120
30192
+
Asn
GTT
[ENA]
¡û
>W1711258875
LYUX01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
30159
30231
+
Asn
GTT
[ENA]
¡û
>W1711258907
LYUY01000001
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
27528
27600
+
Asn
GTT
[ENA]
¡û
>W1711466305
MJMG01000001
Alphaproteobacteria
Wolbachia pipientis [MJMG]
49801
49873
+
Asn
GTT
[ENA]
¡û
>W1711745708
MUJL01000083
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
191
263
+
Asn
GTT
[ENA]
¡û
>W1711745733
MUJM01000050
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
610
682
+
Asn
GTT
[ENA]
¡û
>W131052813
AMZJ01000050
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
5681
5753
+
Asn
GTT
[ENA]
¡û
>W131242637
CAOH01000078
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
7419
7491
+
Asn
GTT
[ENA]
¡û
>W131243112
CAOU02000029
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
569
641
+
Asn
GTT
[ENA]
¡û
>C026830
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
840438
840509
+
Asn
GTT
[Ensembl]
¡û
>C026883
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
517429
517358
-
Asn
GTT
[Ensembl]
¡û
>w016786
AAQP01000002
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
11662
11738
+
Asn
GTT
[ENA]
¡û
>w005427
AAGC01000182
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans [AAGC]
20
96
+
Asn
GTT
[ENA]
¡û
>w005394
AAGB01000009
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
6768
6692
-
Asn
GTT
[ENA]
¡û
>WENV180382065
OBOS01098516
[OBOS] marine metagenome; ENVO 00002150
235
161
-
Asn
GTT
[ENA]
¢þ
>W141065633
AQQE01000051
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
144
216
+
Asn
GTT
[ENA]
¡û
>W141145082
AWUH01000083
Alphaproteobacteria
Wolbachia endosymbiont of Glossina morsitans morsitans [AWUH]
408
480
+
Asn
GTT
[ENA]
¡û
>W141240217
CAGB01000084
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
9249
9321
+
Asn
GTT
[ENA]
¡û
>C08011398
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
735025
735097
+
Asn
GTT
[Ensembl]
¡û
>WENV170497510
CEVS01189995
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
103
29
-
Asn
GTT
[ENA]
¢þ
>WENV170793473
MDSV01116826
[MDSV] marine metagenome; seawater
10947
11021
+
Asn
GTT
[ENA]
¢þ
>C181017551
CP015510
Alphaproteobacteria
Wolbachia endosymbiont of Folsomia candida Berlin [CP015510]
255314
255386
+
Asn
GTT
-
¡û
>C191074344
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
413604
413532
-
Asn
GTT
-
¡û
>C191123110
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
930021
929949
-
Asn
GTT
-
¡û
>C191123150
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
997326
997254
-
Asn
GTT
-
¡û
>C191123184
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
997329
997257
-
Asn
GTT
-
¡û
>C191188720
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
1333608
1333680
+
Asn
GTT
-
¡û
>W09113865
ABZA01000003
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
276069
276141
+
Asn
GTT
[ENA]
¡û
>W141812279
JQAM01000024
Alphaproteobacteria
Wolbachia pipientis [JQAM]
108427
108499
+
Asn
GTT
[ENA]
¡û
>W1910213457
FMKF01000016
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
1792
1864
+
Asn
GTT
[ENA]
¡û
>C09111260
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
904522
904594
+
Asn
GTT
[Ensembl]
¡û
>W1910753955
MKIF01000051
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
145
217
+
Asn
GTT
[ENA]
¡û
>W1910759036
MLZJ01000126
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
846
774
-
Asn
GTT
[ENA]
¡û
>W1910760282
MNCG01000127
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
179
251
+
Asn
GTT
[ENA]
¡û
>W1910794363
MRWX01000026
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
14420
14492
+
Asn
GTT
[ENA]
¡û
>W1910802360
MSYL01000210
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
145
217
+
Asn
GTT
[ENA]
¡û
>W1911239446
NSDR01000023
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
12116
12044
-
Asn
GTT
[ENA]
¡û
>W1911239510
NSDS01000127
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
71
143
+
Asn
GTT
[ENA]
¡û
>W1911239523
NSDT01000047
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
12116
12044
-
Asn
GTT
[ENA]
¡û
>W1911281112
NTHL01000062
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
13027
12955
-
Asn
GTT
[ENA]
¡û
>W1911412157
NWVH01000050
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
6773
6701
-
Asn
GTT
[ENA]
¡û
>W1911412201
NWVI01000096
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
6734
6662
-
Asn
GTT
[ENA]
¡û
>W1911412210
NWVI01000161
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
4208
4136
-
Asn
GTT
[ENA]
¡û
>W1911545113
OUNE01000060
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
32023
31951
-
Asn
GTT
[ENA]
¡û
>W1911545141
OUNF01000083
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
1190
1262
+
Asn
GTT
[ENA]
¡û
>W1810758354
QPIP01000068
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
8600
8672
+
Asn
GTT
[ENA]
¡û
>C151001135
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
984912
984984
+
Asn
GTT
[Ensembl]
¡û
>C151102208
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
839692
839764
+
Asn
GTT
[Ensembl]
¡û
>W1510562603
CTEH01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
233539
233611
+
Asn
GTT
[ENA]
¡û
>W1511536220
JYPC01000026
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
1232
1304
+
Asn
GTT
[ENA]
¡û
>W1511574504
LANX01000001
Alphaproteobacteria
Candidatus Neoehrlichia lotoris lotoris str. RAC413 [LANX]
128052
127980
-
Asn
GTT
[ENA]
¡û
>W11145939
AERW01000158
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
126
198
+
Asn
GTT
[ENA]
¡û
>W11145964
AERW01000523
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
279
207
-
Asn
GTT
[ENA]
¡û
>W11185744
CACK01000118
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
8290
8218
-
Asn
GTT
[ENA]
¡û
>C131009137
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
275909
275837
-
Asn
GTT
[Ensembl]
¡û
>C131009146
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
892001
892073
+
Asn
GTT
[Ensembl]
¡û
>W1610673691
LKEQ01000001
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
9349
9277
-
Asn
GTT
[ENA]
¡û
>W1610896086
LRUH01000015
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
37332
37404
+
Asn
GTT
[ENA]
¡û
>W1610922998
LSYX01000124
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
4097
4025
-
Asn
GTT
[ENA]
¡û
>W1610923026
LSYY01000134
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
16534
16606
+
Asn
GTT
[ENA]
¡û
>W1611021076
LYUV01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
4513
4441
-
Asn
GTT
[ENA]
¡û
>W1611021110
LYUW01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
30120
30192
+
Asn
GTT
[ENA]
¡û
>W1611021140
LYUX01000003
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
30159
30231
+
Asn
GTT
[ENA]
¡û
>W1611021172
LYUY01000001
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
27528
27600
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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