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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658326 (50 seq.)
>W1711055052
LRUH01000031
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
4003
4077
+
Gly
GCC
[ENA]
¡û
>W1711250231
LYMV01000110
Alphaproteobacteria
Rickettsia sp. wb [LYMV]
4104
4178
+
Gly
GCC
[ENA]
¡û
>W1711250270
LYMW01000125
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
4100
4174
+
Gly
GCC
[ENA]
¡û
>C171035083
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
1247795
1247721
-
Gly
GCC
-
¡û
>W131045790
AMRT01000001
Alphaproteobacteria
Rickettsia japonica YH [AMRT]
107357
107431
+
Gly
GCC
[ENA]
¡û
>W131111750
APMN01000009
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
412657
412731
+
Gly
GCC
[ENA]
¡û
>W131111766
APMO01000004
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
33126
33052
-
Gly
GCC
[ENA]
¡û
>C019084
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
736151
736225
+
Gly
GCC
[Ensembl]
¡û
>C019364
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
742580
742654
+
Gly
GCC
[Ensembl]
¡û
>W141147967
AWXL01000019
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
39971
40045
+
Gly
GCC
[ENA]
¡û
>WENV181838507
OGVN01001636
[OGVN] freshwater metagenome; freshwater
2235
2309
+
Gly
GCC
[ENA]
¢þ
>W141255353
CBUA010000074
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
15901
15827
-
Gly
GCC
[ENA]
¡û
>W141264810
CCER01000001
Alphaproteobacteria
Rickettsia aeschlimannii [CCER]
36851
36777
-
Gly
GCC
[ENA]
¡û
>W141266198
CCMG01000008
Alphaproteobacteria
Rickettsia tamurae [CCMG]
15959
16033
+
Gly
GCC
[ENA]
¡û
>WENV170609132
FUWD011286408
[FUWD] metagenome; unknown
38
112
+
Gly
GCC
[ENA]
¢þ
>WENV170643048
JFJP01048927
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3871
3945
+
Gly
GCC
[ENA]
¢þ
>WENV170646889
JQIA01005101
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2457
2383
-
Gly
GCC
[ENA]
¢þ
>W141464122
JFKF01000118
Alphaproteobacteria
Rickettsia tamurae ISO7 [JFKF]
267
341
+
Gly
GCC
[ENA]
¡û
>C181019106
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
925483
925557
+
Gly
GCC
-
¡û
>C191225757
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
742159
742233
+
Gly
GCC
-
¡û
>W09127563
ACLC01000046
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
13297
13371
+
Gly
GCC
[ENA]
¡û
>W1910831794
MWZE01000014
Alphaproteobacteria
Rickettsia endosymbiont of Culicoides newsteadi of Culicoides newsteadi RiCNE [MWZE]
10739
10665
-
Gly
GCC
[ENA]
¡û
>C151094953
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
810281
810207
-
Gly
GCC
-
¡û
>C151104108
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
1120924
1120998
+
Gly
GCC
[Ensembl]
¡û
>W1510060644
CCXM01000001
Alphaproteobacteria
Rickettsia hoogstraalii Croatica [CCXM]
277951
278025
+
Gly
GCC
[ENA]
¡û
>C11118796
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
736064
736138
+
Gly
GCC
[Ensembl]
¡û
>W1511489424
JWSW01000010
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
12828
12754
-
Gly
GCC
[ENA]
¡û
>W1511574275
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
1003683
1003609
-
Gly
GCC
[ENA]
¡û
>W1511574643
LAOB01000002
Alphaproteobacteria
Rickettsia hoogstraalii str. RCCE3 [LAOB]
199885
199959
+
Gly
GCC
[ENA]
¡û
>W1511574849
LAOH01000050
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
15214
15140
-
Gly
GCC
[ENA]
¡û
>W1511575098
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
1018523
1018449
-
Gly
GCC
[ENA]
¡û
>C121011219
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
811271
811197
-
Gly
GCC
[Ensembl]
¡û
>C121011255
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
603862
603788
-
Gly
GCC
[Ensembl]
¡û
>C121011265
CP003340
Alphaproteobacteria
Rickettsia montanensis str. OSU 85-930 [CP003340]
296943
297017
+
Gly
GCC
[Ensembl]
¡û
>C121011341
CP003342
Alphaproteobacteria
Rickettsia rhipicephali str. 3-7-female6-CWPP [CP003342]
936688
936762
+
Gly
GCC
[Ensembl]
¡û
>C121012164
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
734269
734343
+
Gly
GCC
[Ensembl]
¡û
>C121012197
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
736147
736221
+
Gly
GCC
[Ensembl]
¡û
>C121012230
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
736122
736196
+
Gly
GCC
[Ensembl]
¡û
>C121012263
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
734282
734356
+
Gly
GCC
[Ensembl]
¡û
>C121012300
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
1078313
1078387
+
Gly
GCC
[Ensembl]
¡û
>C121012329
CP003396
Alphaproteobacteria
Rickettsia prowazekii str. RpGvF24 [CP003396]
736411
736485
+
Gly
GCC
[Ensembl]
¡û
>C121012360
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
742592
742666
+
Gly
GCC
[Ensembl]
¡û
>C121012393
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
743160
743234
+
Gly
GCC
[Ensembl]
¡û
>C161030386
CP010969
Alphaproteobacteria
Rickettsia conorii subsp. raoultii Khabarovsk [CP010969]
903081
903155
+
Gly
GCC
[Ensembl]
¡û
>C161078735
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
736056
736130
+
Gly
GCC
-
¡û
>W121070056
AJWD01000483
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
814
740
-
Gly
GCC
[ENA]
¡û
>W121102326
AKVZ01000023
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
49159
49233
+
Gly
GCC
[ENA]
¡û
>C131014596
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
559415
559341
-
Gly
GCC
[Ensembl]
¡û
>C131014637
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
33126
33052
-
Gly
GCC
[Ensembl]
¡û
>W1610896098
LRUH01000031
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
4003
4077
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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