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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.670432 (77 seq.)
>A171003603
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1297532
1297461
-
Cys
GCA
-
¡û
>A171004926
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
48035
48106
+
Cys
GCA
-
¡û
>A171004978
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
47697
47768
+
Cys
GCA
-
¡û
>A171005030
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
46508
46579
+
Cys
GCA
-
¡û
>A171005082
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
49126
49197
+
Cys
GCA
-
¡û
>A171005135
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
46569
46640
+
Cys
GCA
-
¡û
>A171005187
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
50030
50101
+
Cys
GCA
-
¡û
>A171005239
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
51362
51433
+
Cys
GCA
-
¡û
>WENV180345441
OBLN01000115
[OBLN] sediment metagenome; sediment
28487
28558
+
Cys
GCA
[ENA]
¢þ
>At1537
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1517109
1517038
-
Cys
GCA
[Ensembl]
¡û
>WENV170722516
LSQX01232629
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2174
2245
+
Cys
GCA
[ENA]
¢þ
>W1910569223
JJOR01000007
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
2395
2466
+
Cys
GCA
[ENA]
¡û
>W1910569299
JJOS01000058
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
28015
27944
-
Cys
GCA
[ENA]
¡û
>W1910569357
JJOT01000059
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
56861
56790
-
Cys
GCA
[ENA]
¡û
>W1910569404
JJOU01000136
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
2377
2448
+
Cys
GCA
[ENA]
¡û
>W1910569464
JJOV01000081
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
6175
6246
+
Cys
GCA
[ENA]
¡û
>W1910569525
JJOW01000311
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
13149
13078
-
Cys
GCA
[ENA]
¡û
>W1910569555
JJOX01000077
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
6193
6264
+
Cys
GCA
[ENA]
¡û
>W1910569586
JJOY01000005
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
199931
200002
+
Cys
GCA
[ENA]
¡û
>W1910569655
JJOZ01000035
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
107760
107689
-
Cys
GCA
[ENA]
¡û
>W1910569703
JJPA01000115
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
15941
15870
-
Cys
GCA
[ENA]
¡û
>W1910569766
JJPB01000109
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
2381
2452
+
Cys
GCA
[ENA]
¡û
>W1910569827
JJPC01000132
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
15982
15911
-
Cys
GCA
[ENA]
¡û
>W1910569884
JJPD01000207
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
2362
2433
+
Cys
GCA
[ENA]
¡û
>W1910569902
JJPE01000060
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
2381
2452
+
Cys
GCA
[ENA]
¡û
>W1910569946
JJPF01000003
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
2381
2452
+
Cys
GCA
[ENA]
¡û
>W1910570008
JJPG01000058
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
2366
2437
+
Cys
GCA
[ENA]
¡û
>W1910570059
JJPH01000042
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
39906
39977
+
Cys
GCA
[ENA]
¡û
>W1910570118
JJPI01000073
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
2328
2399
+
Cys
GCA
[ENA]
¡û
>W1910570186
JJPJ01000128
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
15968
15897
-
Cys
GCA
[ENA]
¡û
>W1910570209
JJPK01000024
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
16106
16035
-
Cys
GCA
[ENA]
¡û
>W1910570295
JJPL01000155
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
15961
15890
-
Cys
GCA
[ENA]
¡û
>W1910570339
JJPM01000281
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
2370
2441
+
Cys
GCA
[ENA]
¡û
>W1910570362
JJPN01000064
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
2384
2455
+
Cys
GCA
[ENA]
¡û
>W1910570424
JJPO01000101
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
2681
2752
+
Cys
GCA
[ENA]
¡û
>W1910570465
JJPP01000052
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
7246
7317
+
Cys
GCA
[ENA]
¡û
>W1910570504
JJPQ01000024
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
2384
2455
+
Cys
GCA
[ENA]
¡û
>W1910570586
JJPR01000108
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
2035
2106
+
Cys
GCA
[ENA]
¡û
>W1910570609
JJPS01000060
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
15770
15699
-
Cys
GCA
[ENA]
¡û
>W1910570679
JJPT01000103
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
7310
7381
+
Cys
GCA
[ENA]
¡û
>W1910570713
JJPU01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
16132
16061
-
Cys
GCA
[ENA]
¡û
>W1910570785
JJPV01000108
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
2328
2399
+
Cys
GCA
[ENA]
¡û
>W1910570815
JJPW01000027
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
2681
2752
+
Cys
GCA
[ENA]
¡û
>W1910570879
JJPX01000099
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
2035
2106
+
Cys
GCA
[ENA]
¡û
>W1910570901
JJPY01000006
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
2384
2455
+
Cys
GCA
[ENA]
¡û
>W1910570955
JJPZ01000019
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
14166
14095
-
Cys
GCA
[ENA]
¡û
>W1910571012
JJQA01000036
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
165985
165914
-
Cys
GCA
[ENA]
¡û
>W1910571096
JJQB01000120
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
152444
152373
-
Cys
GCA
[ENA]
¡û
>W1910571127
JJQC01000077
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
39928
39999
+
Cys
GCA
[ENA]
¡û
>W1910571168
JJQD01000069
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
57872
57943
+
Cys
GCA
[ENA]
¡û
>W1910571231
JJQE01000135
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
81765
81836
+
Cys
GCA
[ENA]
¡û
>W1910571291
JJQF01000117
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
26263
26192
-
Cys
GCA
[ENA]
¡û
>W1910571321
JJQG01000091
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910571377
JJQH01000106
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910571448
JJQI01000107
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
21477
21406
-
Cys
GCA
[ENA]
¡û
>W1910571468
JJQJ01000083
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910571552
JJQK01000253
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
19530
19459
-
Cys
GCA
[ENA]
¡û
>W1910571583
JJQL01000030
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
89373
89302
-
Cys
GCA
[ENA]
¡û
>W1910571624
JJQM01000044
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
14253
14182
-
Cys
GCA
[ENA]
¡û
>W1910571683
JJQN01000037
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
2350
2421
+
Cys
GCA
[ENA]
¡û
>W1910571749
JJQO01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910571799
JJQP01000023
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
7219
7290
+
Cys
GCA
[ENA]
¡û
>W1910571855
JJQQ01000019
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
16081
16010
-
Cys
GCA
[ENA]
¡û
>W1910571942
JJQR01000139
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910571991
JJQS01000110
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
44790
44861
+
Cys
GCA
[ENA]
¡û
>W1910572032
JJQT01000164
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
30082
30153
+
Cys
GCA
[ENA]
¡û
>W1910572081
JJQU01000125
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
27983
27912
-
Cys
GCA
[ENA]
¡û
>W1910572110
JJQV01000031
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
7245
7316
+
Cys
GCA
[ENA]
¡û
>W1910572187
JJQW01000118
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
19707
19636
-
Cys
GCA
[ENA]
¡û
>W1910572239
JJQX01000250
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
2387
2458
+
Cys
GCA
[ENA]
¡û
>W1910572254
JJQY01000030
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
29053
28982
-
Cys
GCA
[ENA]
¡û
>W1910572340
JJQZ01000153
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910572349
JJRA01000013
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
2379
2450
+
Cys
GCA
[ENA]
¡û
>W1910572399
JJRB01000027
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
7240
7311
+
Cys
GCA
[ENA]
¡û
>W1910575075
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
849702
849631
-
Cys
GCA
[ENA]
¡û
>W1610045120
BBBC01000096
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
14353
14282
-
Cys
GCA
[ENA]
¡û
>W1610046909
BBCW01000043
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
41431
41360
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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