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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.671927 (30 seq.)
>A171000020
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1914848
1914919
+
Ala
CGC
-
¡û
>A171000022
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1972429
1972357
-
Ala
CGC
-
¡û
>A171004166
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
266473
266544
+
Ala
CGC
-
¡û
>A171004199
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
336104
336033
-
Ala
CGC
-
¡û
>A171006896
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1307750
1307679
-
Ala
CGC
-
¡û
>A171007008
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
3700413
3700484
+
Ala
CGC
-
¡û
>WENV180318265
OBKM01000229
[OBKM] metagenome; water
26223
26295
+
Ala
CGC
[ENA]
¢þ
>At0816
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1926731
1926802
+
Ala
CGC
[Ensembl]
¡û
>At0839
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1984312
1984241
-
Ala
CGC
[Ensembl]
¡û
>WENV170680178
LFCJ01005234
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2189
2260
+
Ala
CGC
[ENA]
¢þ
>WENV170680340
LFCJ01008992
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7019
6948
-
Ala
CGC
[ENA]
¢þ
>WENV170680354
LFCJ01009601
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4641
4567
-
Ala
CGC
[ENA]
¢þ
>WENV170682039
LFFM01005294
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7362
7433
+
Ala
CGC
[ENA]
¢þ
>WENV170682224
LFFM01007548
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4641
4567
-
Ala
CGC
[ENA]
¢þ
>WENV170682257
LFFM01008065
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5521
5450
-
Ala
CGC
[ENA]
¢þ
>WENV170702326
LKMJ01001284
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8603
8529
-
Ala
CGC
[ENA]
¢þ
>WENV170702454
LKMJ01002003
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
18430
18356
-
Ala
CGC
[ENA]
¢þ
>WENV170702545
LKMJ01002497
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
16862
16791
-
Ala
CGC
[ENA]
¢þ
>WENV170703762
LKMJ01016481
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4112
4041
-
Ala
CGC
[ENA]
¢þ
>W1910226759
FNBK01000015
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
11633
11562
-
Ala
CGC
[ENA]
¡û
>W1910228442
FNPB01000012
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
81418
81347
-
Ala
CGC
[ENA]
¡û
>W1910228593
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
1074117
1074045
-
Ala
CGC
[ENA]
¡û
>W1910229592
FNYR01000037
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
14008
13937
-
Ala
CGC
[ENA]
¡û
>W1910229707
FOCX01000016
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
83888
83959
+
Ala
CGC
[ENA]
¡û
>W1911693746
QLVG01000038
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
16815
16887
+
Ala
CGC
[ENA]
¡û
>W1911709857
QPMJ01000001
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
27088
27159
+
Ala
CGC
[ENA]
¡û
>W1911709974
QPND01000006
Euryarchaeota
Saliphagus sp. LR7 [QPND]
158951
158879
-
Ala
CGC
[ENA]
¡û
>W1610004162
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
175536
175607
+
Ala
CGC
[ENA]
¡û
>W1610004193
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
245167
245096
-
Ala
CGC
[ENA]
¡û
>W1610020306
ASGZ01000056
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
16767
16695
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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