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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81000 (93 seq.)
>A171003593
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
3068489
3068573
+
Leu
CAA
-
¡û
>A171004387
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
341805
341722
-
Leu
CAA
-
¡û
>A171004623
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1615171
1615254
+
Leu
CAA
-
¡û
>A171004675
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1513776
1513859
+
Leu
CAA
-
¡û
>A171004802
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1741773
1741691
-
Leu
CAA
-
¡û
>A171004855
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1692787
1692705
-
Leu
CAA
-
¡û
>A171004909
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
2107754
2107672
-
Leu
CAA
-
¡û
>A171004958
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2022010
2021926
-
Leu
CAA
-
¡û
>A171005010
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2013666
2013582
-
Leu
CAA
-
¡û
>A171005062
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2084739
2084655
-
Leu
CAA
-
¡û
>A171005093
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1882822
1882906
+
Leu
CAA
-
¡û
>A171005159
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
3747580
3747496
-
Leu
CAA
-
¡û
>A171005272
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
2548547
2548465
-
Leu
CAA
-
¡û
>A171005296
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
801571
801654
+
Leu
CAA
-
¡û
>A171005405
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
2346563
2346646
+
Leu
CAA
-
¡û
>A171005537
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
2020950
2020867
-
Leu
CAA
-
¡û
>A171005572
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
2797605
2797688
+
Leu
CAA
-
¡û
>A171005657
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
346178
346095
-
Leu
CAA
-
¡û
>WENV180345795
OBLN01005727
[OBLN] sediment metagenome; sediment
3145
3061
-
Leu
CAA
[ENA]
¢þ
>At1385
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
3040853
3040935
+
Leu
CAA
[Ensembl]
¡û
>At1452
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4006296
4006378
+
Leu
CAA
[Ensembl]
¡û
>At1525
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
3637591
3637673
+
Leu
CAA
[Ensembl]
¡û
>WENV170670569
LAHT01051384
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
110
195
+
Leu
CAA
[ENA]
¢þ
>WENV170716992
LSQX01019761
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7001
7086
+
Leu
CAA
[ENA]
¢þ
>W1910569261
JJOR01000142
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
14633
14717
+
Leu
CAA
[ENA]
¡û
>W1910569291
JJOS01000034
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
14637
14721
+
Leu
CAA
[ENA]
¡û
>W1910569344
JJOT01000025
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
27875
27791
-
Leu
CAA
[ENA]
¡û
>W1910569393
JJOU01000085
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
46128
46212
+
Leu
CAA
[ENA]
¡û
>W1910569463
JJOV01000080
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
19153
19238
+
Leu
CAA
[ENA]
¡û
>W1910569523
JJOW01000287
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
4953
4868
-
Leu
CAA
[ENA]
¡û
>W1910569544
JJOX01000046
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
22836
22921
+
Leu
CAA
[ENA]
¡û
>W1910569607
JJOY01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
22836
22921
+
Leu
CAA
[ENA]
¡û
>W1910569629
JJOZ01000003
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
45662
45577
-
Leu
CAA
[ENA]
¡û
>W1910569715
JJPA01000190
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
14306
14390
+
Leu
CAA
[ENA]
¡û
>W1910569744
JJPB01000043
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
42588
42672
+
Leu
CAA
[ENA]
¡û
>W1910569824
JJPC01000129
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
14606
14690
+
Leu
CAA
[ENA]
¡û
>W1910569873
JJPD01000163
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
19028
18944
-
Leu
CAA
[ENA]
¡û
>W1910569897
JJPE01000023
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
16451
16535
+
Leu
CAA
[ENA]
¡û
>W1910569952
JJPF01000022
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
19043
18959
-
Leu
CAA
[ENA]
¡û
>W1910570021
JJPG01000098
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
19043
18959
-
Leu
CAA
[ENA]
¡û
>W1910570040
JJPH01000001
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
19027
18943
-
Leu
CAA
[ENA]
¡û
>W1910570129
JJPI01000095
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
14637
14721
+
Leu
CAA
[ENA]
¡û
>W1910570188
JJPJ01000135
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
26930
26846
-
Leu
CAA
[ENA]
¡û
>W1910570238
JJPK01000114
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
14661
14745
+
Leu
CAA
[ENA]
¡û
>W1910570248
JJPL01000039
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
14615
14699
+
Leu
CAA
[ENA]
¡û
>W1910570337
JJPM01000271
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
6924
7008
+
Leu
CAA
[ENA]
¡û
>W1910570356
JJPN01000041
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
14618
14702
+
Leu
CAA
[ENA]
¡û
>W1910570398
JJPO01000008
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
14592
14676
+
Leu
CAA
[ENA]
¡û
>W1910570476
JJPP01000120
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
11813
11897
+
Leu
CAA
[ENA]
¡û
>W1910570536
JJPQ01000124
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
19043
18959
-
Leu
CAA
[ENA]
¡û
>W1910570570
JJPR01000085
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
6644
6560
-
Leu
CAA
[ENA]
¡û
>W1910570602
JJPS01000022
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
6644
6560
-
Leu
CAA
[ENA]
¡û
>W1910570684
JJPT01000133
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
14666
14750
+
Leu
CAA
[ENA]
¡û
>W1910570709
JJPU01000049
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
14636
14720
+
Leu
CAA
[ENA]
¡û
>W1910570784
JJPV01000099
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
42083
41999
-
Leu
CAA
[ENA]
¡û
>W1910570841
JJPW01000090
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
14643
14727
+
Leu
CAA
[ENA]
¡û
>W1910570897
JJPX01000173
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
14310
14394
+
Leu
CAA
[ENA]
¡û
>W1910570950
JJPY01000127
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
14619
14703
+
Leu
CAA
[ENA]
¡û
>W1910570975
JJPZ01000057
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
14618
14702
+
Leu
CAA
[ENA]
¡û
>W1910571018
JJQA01000075
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
6042
5958
-
Leu
CAA
[ENA]
¡û
>W1910571079
JJQB01000089
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
6042
5958
-
Leu
CAA
[ENA]
¡û
>W1910571115
JJQC01000057
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
14612
14696
+
Leu
CAA
[ENA]
¡û
>W1910571177
JJQD01000113
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
6777
6693
-
Leu
CAA
[ENA]
¡û
>W1910571227
JJQE01000132
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
43705
43789
+
Leu
CAA
[ENA]
¡û
>W1910571299
JJQF01000129
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
14626
14710
+
Leu
CAA
[ENA]
¡û
>W1910571325
JJQG01000092
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
14633
14717
+
Leu
CAA
[ENA]
¡û
>W1910571385
JJQH01000126
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910571450
JJQI01000109
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
14336
14420
+
Leu
CAA
[ENA]
¡û
>W1910571460
JJQJ01000013
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
27785
27701
-
Leu
CAA
[ENA]
¡û
>W1910571538
JJQK01000195
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
14304
14388
+
Leu
CAA
[ENA]
¡û
>W1910571612
JJQL01000096
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
407
322
-
Leu
CAA
[ENA]
¡û
>W1910571632
JJQM01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
14666
14750
+
Leu
CAA
[ENA]
¡û
>W1910571705
JJQN01000089
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
14630
14714
+
Leu
CAA
[ENA]
¡û
>W1910571794
JJQO01000349
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
27839
27755
-
Leu
CAA
[ENA]
¡û
>W1910571811
JJQP01000106
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
9648
9732
+
Leu
CAA
[ENA]
¡û
>W1910571864
JJQQ01000050
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
28071
27987
-
Leu
CAA
[ENA]
¡û
>W1910571929
JJQR01000087
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
14636
14720
+
Leu
CAA
[ENA]
¡û
>W1910571967
JJQS01000045
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
27821
27737
-
Leu
CAA
[ENA]
¡û
>W1910572030
JJQT01000152
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910572100
JJQU01000257
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
14572
14656
+
Leu
CAA
[ENA]
¡û
>W1910572124
JJQV01000053
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
14632
14716
+
Leu
CAA
[ENA]
¡û
>W1910572182
JJQW01000101
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
1613
1529
-
Leu
CAA
[ENA]
¡û
>W1910572243
JJQX01000260
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910572282
JJQY01000127
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
5669
5754
+
Leu
CAA
[ENA]
¡û
>W1910572319
JJQZ01000072
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910572358
JJRA01000040
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910572414
JJRB01000046
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
27803
27719
-
Leu
CAA
[ENA]
¡û
>W1910575066
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2886031
2885947
-
Leu
CAA
[ENA]
¡û
>W1910635257
LMVP01000434
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
3241
3158
-
Leu
CAA
[ENA]
¡û
>W1910655380
LZPK01000090
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
11103
11020
-
Leu
CAA
[ENA]
¡û
>W1610000052
AAAR03000050
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
2509
2424
-
Leu
CAA
[ENA]
¡û
>W1610045101
BBBC01000026
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
27875
27790
-
Leu
CAA
[ENA]
¡û
>W1610048621
BBEF01000094
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
1190
1275
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK