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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8643 (81 seq.)
>W1710935251
LOKA01000004
Gammaproteobacteria
Xanthomonas axonopodis pv. clitoriae [LOKA]
244647
244555
-
Ile
TAT
[ENA]
¡û
>W1710935323
LOKG01000029
Gammaproteobacteria
Xanthomonas campestris pv. vitiswoodrowii [LOKG]
224324
224232
-
Ile
TAT
[ENA]
¡û
>W1711191588
LWSU01000057
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
25194
25286
+
Ile
TAT
[ENA]
¡û
>W1711296935
MADN01000063
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADN]
1099
1007
-
Ile
TAT
[ENA]
¡û
>W1711296995
MADO01000095
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADO]
1099
1007
-
Ile
TAT
[ENA]
¡û
>W1711360631
MDJT01000177
Gammaproteobacteria
Xanthomonas citri pv. citri [MDJT]
4584
4492
-
Ile
TAT
[ENA]
¡û
>PL171000007
AM039949
Gammaproteobacteria
Xanthomonas euvesicatoria 85-10 plasmid:pXCV19
4401
4309
-
Ile
TAT
[ENA]
¡û
>PL171001299
CP017193
Gammaproteobacteria
Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid:p_XCV_3
2479
2571
+
Ile
TAT
[ENA]
¡û
>PL171001341
CP018463
Gammaproteobacteria
Xanthomonas euvesicatoria LMG930 plasmid:pLMG930.2
88975
88883
-
Ile
TAT
[ENA]
¡û
>C171080308
CP018470
Gammaproteobacteria
Xanthomonas vesicatoria LM159 [CP018470]
780507
780599
+
Ile
TAT
-
¡û
>C171082755
CP018725
Gammaproteobacteria
Xanthomonas vesicatoria ATCC 35937 LMG911 [CP018725]
460251
460343
+
Ile
TAT
-
¡û
>C171131578
LT853880
Gammaproteobacteria
Xanthomonas fragariae NBC2815 [LT853880]
697646
697554
-
Ile
TAT
-
¡û
>C171131656
LT853885
Gammaproteobacteria
Xanthomonas fragariae PD5205 [LT853885]
3668282
3668374
+
Ile
TAT
-
¡û
>W131156369
AQPR01001266
Gammaproteobacteria
Xanthomonas maliensis 97M [AQPR]
122
30
-
Ile
TAT
[ENA]
¡û
>W141022083
AJRZ01000010
Gammaproteobacteria
Xanthomonas fragariae LMG 25863 [AJRZ]
50502
50410
-
Ile
TAT
[ENA]
¡û
>WENV170706481
LNAP01003440
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13530
13622
+
Ile
TAT
[ENA]
¢þ
>C191128288
CP034657
Gammaproteobacteria
Xanthomonas vasicola NCPPB 902 [CP034657]
4429873
4429781
-
Ile
TAT
-
¡û
>C191128299
CP034657
Gammaproteobacteria
Xanthomonas vasicola NCPPB 902 [CP034657]
2739025
2738933
-
Ile
TAT
-
¡û
>C191149197
CP036251
Gammaproteobacteria
Xanthomonas oryzae X11-5A [CP036251]
1599821
1599729
-
Ile
TAT
-
¡û
>W1910693077
MDEF01000130
Gammaproteobacteria
Xanthomonas hortorum pv. hederae CFBP4925 [MDEF]
4041
3949
-
Ile
TAT
[ENA]
¡û
>W1910693133
MDEG01000062
Gammaproteobacteria
Xanthomonas hyacinthi CFBP1156 [MDEG]
1186
1094
-
Ile
TAT
[ENA]
¡û
>W1910694445
MDSM01000039
Gammaproteobacteria
Xanthomonas arboricola pv. juglandis CFBP 8253 [MDSM]
21283
21375
+
Ile
TAT
[ENA]
¡û
>W1910745937
MIGV01000035
Gammaproteobacteria
Xanthomonas arboricola pv. populi CFBP 3122 [MIGV]
13675
13767
+
Ile
TAT
[ENA]
¡û
>W1911542312
ORYC01000178
Gammaproteobacteria
Xanthomonas fragariae CFBP 5253 [ORYC]
43893
43985
+
Ile
TAT
[ENA]
¡û
>W1911542409
ORYE01000336
Gammaproteobacteria
Xanthomonas fragariae CFBP 5257 [ORYE]
1565
1657
+
Ile
TAT
[ENA]
¡û
>W1911542558
ORYI01000032
Gammaproteobacteria
Xanthomonas fragariae F2-02 [ORYI]
11567
11475
-
Ile
TAT
[ENA]
¡û
>W1911542794
ORYM01000325
Gammaproteobacteria
Xanthomonas fragariae ICMP 20572 [ORYM]
11958
12050
+
Ile
TAT
[ENA]
¡û
>W1911542938
ORYP01000294
Gammaproteobacteria
Xanthomonas fragariae ICMP 20575 [ORYP]
206
298
+
Ile
TAT
[ENA]
¡û
>W1911543185
ORYV01000050
Gammaproteobacteria
Xanthomonas fragariae ICMP 659 [ORYV]
12090
11998
-
Ile
TAT
[ENA]
¡û
>W1911543248
ORYW01000178
Gammaproteobacteria
Xanthomonas fragariae ICMP 6278 [ORYW]
2433
2525
+
Ile
TAT
[ENA]
¡û
>W1911543378
ORYZ01000063
Gammaproteobacteria
Xanthomonas fragariae ICMP 6646 [ORYZ]
11567
11475
-
Ile
TAT
[ENA]
¡û
>W1911543571
ORZD01000040
Gammaproteobacteria
Xanthomonas fragariae NCPPB 2473 [ORZD]
11687
11595
-
Ile
TAT
[ENA]
¡û
>W1911544098
ORZM01000201
Gammaproteobacteria
Xanthomonas fragariae PD 3170 [ORZM]
29985
30077
+
Ile
TAT
[ENA]
¡û
>W1911544248
ORZP01000202
Gammaproteobacteria
Xanthomonas fragariae PD 4932 [ORZP]
29982
30074
+
Ile
TAT
[ENA]
¡û
>W1911544548
ORZV01000237
Gammaproteobacteria
Xanthomonas fragariae PD 6880 [ORZV]
11834
11742
-
Ile
TAT
[ENA]
¡û
>W1911544626
ORZX01000129
Gammaproteobacteria
Xanthomonas fragariae PD 885 [ORZX]
11834
11742
-
Ile
TAT
[ENA]
¡û
>W1911582428
PHKV01000011
Gammaproteobacteria
Xanthomonas prunicola CFBP8353 [PHKV]
82295
82387
+
Ile
TAT
[ENA]
¡û
>W1911582480
PHKW01000012
Gammaproteobacteria
Xanthomonas prunicola CFBP8354 [PHKW]
868
776
-
Ile
TAT
[ENA]
¡û
>W1911582534
PHKX01000009
Gammaproteobacteria
Xanthomonas prunicola CFBP8355 [PHKX]
83397
83489
+
Ile
TAT
[ENA]
¡û
>W1911659297
QEYT01001588
Gammaproteobacteria
Xanthomonas vesicatoria DAR26933 [QEYT]
17178
17267
+
Ile
TAT
[ENA]
¡û
>W1911659348
QEYU01000029
Gammaproteobacteria
Xanthomonas vesicatoria DAR26931 [QEYU]
17179
17268
+
Ile
TAT
[ENA]
¡û
>W1911659562
QEYZ01000003
Gammaproteobacteria
Xanthomonas vesicatoria BRIP38861 [QEYZ]
17189
17278
+
Ile
TAT
[ENA]
¡û
>W1911659628
QEZA01000041
Gammaproteobacteria
Xanthomonas vesicatoria BRIP38864 [QEZA]
17189
17278
+
Ile
TAT
[ENA]
¡û
>W1911659676
QEZB01000026
Gammaproteobacteria
Xanthomonas vesicatoria BRIP62429 [QEZB]
16934
16845
-
Ile
TAT
[ENA]
¡û
>W1911659734
QEZC01000024
Gammaproteobacteria
Xanthomonas vesicatoria BRIP62428 [QEZC]
105884
105795
-
Ile
TAT
[ENA]
¡û
>W1911659771
QEZD01000037
Gammaproteobacteria
Xanthomonas vesicatoria BRIP62388 [QEZD]
58449
58538
+
Ile
TAT
[ENA]
¡û
>W1911659868
QEZE01000059
Gammaproteobacteria
Xanthomonas vesicatoria BRIP62423 [QEZE]
17210
17299
+
Ile
TAT
[ENA]
¡û
>W1911659920
QEZF01000042
Gammaproteobacteria
Xanthomonas vesicatoria BRIP62413 [QEZF]
8559
8470
-
Ile
TAT
[ENA]
¡û
>W1911671897
QGAK01000001
Gammaproteobacteria
Stenotrophomonas rhizophila CFBP13529 [QGAK]
552400
552492
+
Ile
TAT
[ENA]
¡û
>W1810331279
PUPP01000001
Gammaproteobacteria
Xanthomonas campestris LMC_P47 [PUPP]
2640008
2640100
+
Ile
TAT
[ENA]
¡û
>W1810403308
PYJG01000133
Gammaproteobacteria
Xanthomonas hortorum pv. hederae WHRI 7744 [PYJG]
4112
4020
-
Ile
TAT
[ENA]
¡û
>W1810541245
QDID01000001
Gammaproteobacteria
Stenotrophomonas maltophilia SM7059 [QDID]
334202
334294
+
Ile
TAT
[ENA]
¡û
>W1810788711
QREP01000003
Gammaproteobacteria
Xanthomonas campestris LMC_P11 [QREP]
974455
974363
-
Ile
TAT
[ENA]
¡û
>C151068252
CP010409
Gammaproteobacteria
Xanthomonas sacchari R1 [CP010409]
597959
597867
-
Ile
TAT
[Ensembl]
¡û
>W1511305305
JPLD01000519
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
1131
1039
-
Ile
TAT
[ENA]
¡û
>W1511362044
JSBX01000125
Gammaproteobacteria
Xanthomonas vasicola NCPPB 1396 [JSBX]
200
292
+
Ile
TAT
[ENA]
¡û
>W1511362074
JSBY02000028
Gammaproteobacteria
Xanthomonas vasicola NCPPB 902 [JSBY]
51430
51338
-
Ile
TAT
[ENA]
¡û
>W1511362138
JSBZ01000043
Gammaproteobacteria
Xanthomonas vasicola NCPPB 1395 [JSBZ]
196
288
+
Ile
TAT
[ENA]
¡û
>W1511366890
JSFN01000068
Gammaproteobacteria
Xanthomonas vasicola NCPPB 1394 [JSFN]
34268
34176
-
Ile
TAT
[ENA]
¡û
>W1511390540
JSXZ01000128
Gammaproteobacteria
Xanthomonas vesicatoria 15b [JSXZ]
11319
11411
+
Ile
TAT
[ENA]
¡û
>W1511390785
JSYJ01000004
Gammaproteobacteria
Xanthomonas vesicatoria 53M [JSYJ]
20946
20854
-
Ile
TAT
[ENA]
¡û
>W1511391884
JSZG01000214
Gammaproteobacteria
Xanthomonas euvesicatoria 66b [JSZG]
238
330
+
Ile
TAT
[ENA]
¡û
>W1511508869
JXQP01000011
Gammaproteobacteria
Xanthomonas campestris LMCP11 [JXQP]
77804
77712
-
Ile
TAT
[ENA]
¡û
>W1511541199
JZEI01000001
Gammaproteobacteria
Xanthomonas arboricola CFBP 7651 [JZEI]
2743538
2743446
-
Ile
TAT
[ENA]
¡û
>W1511542942
JZIJ01000005
Gammaproteobacteria
Xanthomonas albilineans USA048 [JZIJ]
1675853
1675761
-
Ile
TAT
[ENA]
¡û
>W1511542992
JZIK01000001
Gammaproteobacteria
Xanthomonas albilineans Xa23R1 [JZIK]
1669730
1669638
-
Ile
TAT
[ENA]
¡û
>W1511546985
JZLP01000044
Gammaproteobacteria
Xanthomonas euvesicatoria 315 [JZLP]
70646
70738
+
Ile
TAT
[ENA]
¡û
>W11144548
AEQV01000056
Gammaproteobacteria
Xanthomonas vesicatoria ATCC 35937 [AEQV]
6662
6570
-
Ile
TAT
[ENA]
¡û
>W11163023
AFHK01000270
Gammaproteobacteria
Xanthomonas oryzae X11-5A [AFHK]
1593
1501
-
Ile
TAT
[ENA]
¡û
>W1610083904
CCVY01000007
Gammaproteobacteria
Xanthomonas citri pv. citri [CCVY]
17064
16972
-
Ile
TAT
[ENA]
¡û
>W121079086
AKDV01000178
Gammaproteobacteria
Xanthomonas phaseoli pv. manihotis str. IBSBF 2822 [AKDV]
8596
8504
-
Ile
TAT
[ENA]
¡û
>W1610527371
JPYD01000361
Gammaproteobacteria
Xanthomonas citri subsp. citri [JPYD]
5564
5656
+
Ile
TAT
[ENA]
¡û
>W1610527562
JPYH01000143
Gammaproteobacteria
Xanthomonas citri [JPYH]
10246
10338
+
Ile
TAT
[ENA]
¡û
>W1610541635
JTEF01000001
Gammaproteobacteria
Xanthomonas vesicatoria [JTEF]
99545
99453
-
Ile
TAT
[ENA]
¡û
>W1610541699
JTEG01000034
Gammaproteobacteria
Xanthomonas vesicatoria [JTEG]
17336
17428
+
Ile
TAT
[ENA]
¡û
>W1610992999
LWSU01000057
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
25194
25286
+
Ile
TAT
[ENA]
¡û
>W1710088766
CCVY01000007
Gammaproteobacteria
Xanthomonas citri pv. citri [CCVY]
17064
16972
-
Ile
TAT
[ENA]
¡û
>W1710628874
JPYD01000361
Gammaproteobacteria
Xanthomonas citri subsp. citri [JPYD]
5564
5656
+
Ile
TAT
[ENA]
¡û
>W1710629020
JPYH02000050
Gammaproteobacteria
Xanthomonas citri [JPYH]
10246
10338
+
Ile
TAT
[ENA]
¡û
>W1710644766
JTEF01000001
Gammaproteobacteria
Xanthomonas vesicatoria [JTEF]
99545
99453
-
Ile
TAT
[ENA]
¡û
>W1710644830
JTEG01000034
Gammaproteobacteria
Xanthomonas vesicatoria [JTEG]
17336
17428
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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