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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95580 (116 seq.)
>W1711792092
MWJI01000018
Bacillota
Paraclostridium bifermentans [MWJI]
82
166
+
Tyr
GTA
[ENA]
¡û
>WENV180168332
OAVQ01001974
[OAVQ] human gut metagenome; faeces
379
463
+
Tyr
GTA
[ENA]
¢þ
>WENV180168657
OAVR01010621
[OAVR] human gut metagenome; faeces
86
2
-
Tyr
GTA
[ENA]
¢þ
>WENV180419459
OBVM01016754
[OBVM] human gut metagenome; faeces
106
190
+
Tyr
GTA
[ENA]
¢þ
>WENV180436693
OBWN01011117
[OBWN] human gut metagenome; faeces
248
164
-
Tyr
GTA
[ENA]
¢þ
>WENV180436699
OBWN01012598
[OBWN] human gut metagenome; faeces
334
418
+
Tyr
GTA
[ENA]
¢þ
>WENV180436725
OBWN01027474
[OBWN] human gut metagenome; faeces
91
7
-
Tyr
GTA
[ENA]
¢þ
>WENV180444519
OBWZ01029032
[OBWZ] human gut metagenome; faeces
165
81
-
Tyr
GTA
[ENA]
¢þ
>W141064566
APWR01000085
Bacillota
Paeniclostridium sordellii ATCC 9714 [APWR]
184
268
+
Tyr
GTA
[ENA]
¡û
>WENV181810220
OGSU01006788
[OGSU] human gut metagenome; fecal sample 7 from infant 5
393
477
+
Tyr
GTA
[ENA]
¢þ
>WENV182832453
OKEM01001224
[OKEM] human gut metagenome; human gut
507
423
-
Tyr
GTA
[ENA]
¢þ
>WENV182852282
OKLW01000420
[OKLW] human gut metagenome; human gut
1160
1076
-
Tyr
GTA
[ENA]
¢þ
>WENV182852535
OKLY01004622
[OKLY] human gut metagenome; human gut
398
482
+
Tyr
GTA
[ENA]
¢þ
>WENV183163700
OLOW01022797
[OLOW] human gut metagenome; faeces
1989
1905
-
Tyr
GTA
[ENA]
¢þ
>WENV170683855
LFRM01008082
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1418
1502
+
Tyr
GTA
[ENA]
¢þ
>WENV170686896
LFRM01168825
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
233
317
+
Tyr
GTA
[ENA]
¢þ
>W09133463
ACPD01000007
Bacillota
Clostridium cellulovorans 743B [ACPD]
41829
41745
-
Tyr
GTA
[ENA]
¡û
>C181015900
CP014150
Bacillota
Paeniclostridium sordellii AM370 [CP014150]
30434
30518
+
Tyr
GTA
-
¡û
>C181015920
CP014150
Bacillota
Paeniclostridium sordellii AM370 [CP014150]
32198
32282
+
Tyr
GTA
-
¡û
>C181015970
CP014150
Bacillota
Paeniclostridium sordellii AM370 [CP014150]
3446359
3446275
-
Tyr
GTA
-
¡û
>C191184280
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3147014
3146930
-
Tyr
GTA
-
¡û
>W1910387309
FUPB01000012
Bacillota
Clostridioides difficile VRECD0114 [FUPB]
77174
77090
-
Tyr
GTA
[ENA]
¡û
>W1510020650
BBYC01000100
Bacillota
Clostridioides difficile KY64 [BBYC]
286
202
-
Tyr
GTA
[ENA]
¡û
>W1510020663
BBYC01000136
Bacillota
Clostridioides difficile KY64 [BBYC]
182
98
-
Tyr
GTA
[ENA]
¡û
>W1510073093
CDLJ01000015
Bacillota
Paeniclostridium sordellii JGS6364 [CDLJ]
1399
1315
-
Tyr
GTA
[ENA]
¡û
>W1510073140
CDLK01000024
Bacillota
Paeniclostridium sordellii UMC2 [CDLK]
2335
2251
-
Tyr
GTA
[ENA]
¡û
>W1510073160
CDLK01000033
Bacillota
Paeniclostridium sordellii UMC2 [CDLK]
1368
1284
-
Tyr
GTA
[ENA]
¡û
>W1510074671
CDNE01000009
Bacillota
Paeniclostridium sordellii SSCC18392 [CDNE]
2430
2346
-
Tyr
GTA
[ENA]
¡û
>W1510074691
CDNE01000013
Bacillota
Paeniclostridium sordellii SSCC18392 [CDNE]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510074739
CDNF01000018
Bacillota
Paeniclostridium sordellii SSCC35109 [CDNF]
704
788
+
Tyr
GTA
[ENA]
¡û
>W1510074862
CDNH01000016
Bacillota
Paeniclostridium sordellii SSCC42239 [CDNH]
449
365
-
Tyr
GTA
[ENA]
¡û
>W1510074899
CDNI01000011
Bacillota
Paeniclostridium sordellii JGS6961 [CDNI]
5768
5684
-
Tyr
GTA
[ENA]
¡û
>W1510074917
CDNI01000011
Bacillota
Paeniclostridium sordellii JGS6961 [CDNI]
4209
4125
-
Tyr
GTA
[ENA]
¡û
>W1510074939
CDNI01000011
Bacillota
Paeniclostridium sordellii JGS6961 [CDNI]
2263
2179
-
Tyr
GTA
[ENA]
¡û
>W1510074962
CDNI01000013
Bacillota
Paeniclostridium sordellii JGS6961 [CDNI]
1198
1282
+
Tyr
GTA
[ENA]
¡û
>W1510075009
CDNJ01000011
Bacillota
Paeniclostridium sordellii JGS444 [CDNJ]
2445
2361
-
Tyr
GTA
[ENA]
¡û
>W1510075036
CDNJ01000012
Bacillota
Paeniclostridium sordellii JGS444 [CDNJ]
1676
1592
-
Tyr
GTA
[ENA]
¡û
>W1510075052
CDNJ01000016
Bacillota
Paeniclostridium sordellii JGS444 [CDNJ]
732
648
-
Tyr
GTA
[ENA]
¡û
>W1510075117
CDNK01000015
Bacillota
Paeniclostridium sordellii SSCC18838 [CDNK]
446
362
-
Tyr
GTA
[ENA]
¡û
>W1510075126
CDNK01000016
Bacillota
Paeniclostridium sordellii SSCC18838 [CDNK]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510075174
CDNL01000010
Bacillota
Paeniclostridium sordellii E204 [CDNL]
2408
2324
-
Tyr
GTA
[ENA]
¡û
>W1510075198
CDNL01000012
Bacillota
Paeniclostridium sordellii E204 [CDNL]
1372
1288
-
Tyr
GTA
[ENA]
¡û
>W1510075264
CDNM01000022
Bacillota
Paeniclostridium sordellii UMC1 [CDNM]
434
350
-
Tyr
GTA
[ENA]
¡û
>W1510075300
CDNN01000017
Bacillota
Paeniclostridium sordellii JGS6956 [CDNN]
2373
2289
-
Tyr
GTA
[ENA]
¡û
>W1510075323
CDNN01000018
Bacillota
Paeniclostridium sordellii JGS6956 [CDNN]
712
796
+
Tyr
GTA
[ENA]
¡û
>W1510075374
CDNO01000012
Bacillota
Paeniclostridium sordellii SSCC37615 [CDNO]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510075403
CDNO01000016
Bacillota
Paeniclostridium sordellii SSCC37615 [CDNO]
530
446
-
Tyr
GTA
[ENA]
¡û
>W1510075455
CDNP01000012
Bacillota
Paeniclostridium sordellii UMC178 [CDNP]
691
775
+
Tyr
GTA
[ENA]
¡û
>W1510075474
CDNP01000016
Bacillota
Paeniclostridium sordellii UMC178 [CDNP]
1398
1314
-
Tyr
GTA
[ENA]
¡û
>W1510075525
CDNQ01000011
Bacillota
Paeniclostridium sordellii SSCC32135 [CDNQ]
2462
2378
-
Tyr
GTA
[ENA]
¡û
>W1510075551
CDNQ01000017
Bacillota
Paeniclostridium sordellii SSCC32135 [CDNQ]
372
456
+
Tyr
GTA
[ENA]
¡û
>W1510075651
CDNS01000010
Bacillota
Paeniclostridium sordellii UMC4401 [CDNS]
2401
2317
-
Tyr
GTA
[ENA]
¡û
>W1510075675
CDNS01000011
Bacillota
Paeniclostridium sordellii UMC4401 [CDNS]
1174
1258
+
Tyr
GTA
[ENA]
¡û
>W1510075785
CDNU01000011
Bacillota
Paeniclostridium sordellii JGS445 [CDNU]
179
263
+
Tyr
GTA
[ENA]
¡û
>W1510075796
CDNU01000011
Bacillota
Paeniclostridium sordellii JGS445 [CDNU]
1145
1229
+
Tyr
GTA
[ENA]
¡û
>W1510075808
CDNU01000011
Bacillota
Paeniclostridium sordellii JGS445 [CDNU]
2292
2376
+
Tyr
GTA
[ENA]
¡û
>W1510075830
CDNU01000011
Bacillota
Paeniclostridium sordellii JGS445 [CDNU]
4239
4323
+
Tyr
GTA
[ENA]
¡û
>W1510075885
CDNV01000011
Bacillota
Paeniclostridium sordellii SSCC33589 [CDNV]
712
796
+
Tyr
GTA
[ENA]
¡û
>W1510075916
CDNV01000018
Bacillota
Paeniclostridium sordellii SSCC33589 [CDNV]
185
101
-
Tyr
GTA
[ENA]
¡û
>W1510075950
CDNW01000013
Bacillota
Paeniclostridium sordellii SSCC33587 [CDNW]
502
586
+
Tyr
GTA
[ENA]
¡û
>W1510075967
CDNW01000015
Bacillota
Paeniclostridium sordellii SSCC33587 [CDNW]
1388
1304
-
Tyr
GTA
[ENA]
¡û
>W1510076036
CDNX01000016
Bacillota
Paeniclostridium sordellii SSCC26591 [CDNX]
2231
2315
+
Tyr
GTA
[ENA]
¡û
>W1510076042
CDNX01000017
Bacillota
Paeniclostridium sordellii SSCC26591 [CDNX]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510076813
CDPO01000009
Bacillota
Paeniclostridium sordellii UMC164 [CDPO]
1399
1315
-
Tyr
GTA
[ENA]
¡û
>W1510098593
CEKU01000032
Bacillota
Paeniclostridium sordellii R15892 [CEKU]
49260
49344
+
Tyr
GTA
[ENA]
¡û
>W1510098624
CEKV01000008
Bacillota
Paeniclostridium sordellii R32921 [CEKV]
2507
2423
-
Tyr
GTA
[ENA]
¡û
>W1510098644
CEKV01000011
Bacillota
Paeniclostridium sordellii R32921 [CEKV]
1384
1300
-
Tyr
GTA
[ENA]
¡û
>W1510098695
CEKW01000011
Bacillota
Paeniclostridium sordellii R31809 [CEKW]
2450
2366
-
Tyr
GTA
[ENA]
¡û
>W1510098715
CEKW01000013
Bacillota
Paeniclostridium sordellii R31809 [CEKW]
357
441
+
Tyr
GTA
[ENA]
¡û
>W1510098772
CEKX01000012
Bacillota
Paeniclostridium sordellii W2975 [CEKX]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510098794
CEKX01000013
Bacillota
Paeniclostridium sordellii W2975 [CEKX]
185
101
-
Tyr
GTA
[ENA]
¡û
>W1510098830
CEKY01000013
Bacillota
Paeniclostridium sordellii R32668 [CEKY]
461
545
+
Tyr
GTA
[ENA]
¡û
>W1510098876
CEKY01000026
Bacillota
Paeniclostridium sordellii R32668 [CEKY]
95473
95389
-
Tyr
GTA
[ENA]
¡û
>W1510098910
CEKZ01000012
Bacillota
Paeniclostridium sordellii R28058 [CEKZ]
1047
1131
+
Tyr
GTA
[ENA]
¡û
>W1510098928
CEKZ01000016
Bacillota
Paeniclostridium sordellii R28058 [CEKZ]
288
372
+
Tyr
GTA
[ENA]
¡û
>W1510098968
CELA01000007
Bacillota
Paeniclostridium sordellii W3025 [CELA]
185
269
+
Tyr
GTA
[ENA]
¡û
>W1510098987
CELA01000009
Bacillota
Paeniclostridium sordellii W3025 [CELA]
357
441
+
Tyr
GTA
[ENA]
¡û
>W1510099049
CELB01000012
Bacillota
Paeniclostridium sordellii R27882 [CELB]
1234
1318
+
Tyr
GTA
[ENA]
¡û
>W1510099069
CELB01000016
Bacillota
Paeniclostridium sordellii R27882 [CELB]
363
447
+
Tyr
GTA
[ENA]
¡û
>W1510099120
CELC01000010
Bacillota
Paeniclostridium sordellii R32977 [CELC]
692
776
+
Tyr
GTA
[ENA]
¡û
>W1510099139
CELC01000013
Bacillota
Paeniclostridium sordellii R32977 [CELC]
362
446
+
Tyr
GTA
[ENA]
¡û
>W1510099193
CELD01000028
Bacillota
Paeniclostridium sordellii W3026 [CELD]
641
725
+
Tyr
GTA
[ENA]
¡û
>W1510099238
CELE01000015
Bacillota
Paeniclostridium sordellii R30684 [CELE]
93
177
+
Tyr
GTA
[ENA]
¡û
>W1510099294
CELF01000013
Bacillota
Paeniclostridium sordellii W2948 [CELF]
1062
1146
+
Tyr
GTA
[ENA]
¡û
>W1510099317
CELF01000015
Bacillota
Paeniclostridium sordellii W2948 [CELF]
1429
1345
-
Tyr
GTA
[ENA]
¡û
>W1510099376
CELG01000016
Bacillota
Paeniclostridium sordellii R26833 [CELG]
1385
1301
-
Tyr
GTA
[ENA]
¡û
>W1510099398
CELG01000017
Bacillota
Paeniclostridium sordellii R26833 [CELG]
390
306
-
Tyr
GTA
[ENA]
¡û
>W1510099452
CELH01000035
Bacillota
Paeniclostridium sordellii W10 [CELH]
403
319
-
Tyr
GTA
[ENA]
¡û
>W1510099507
CELI01000012
Bacillota
Paeniclostridium sordellii W2945 [CELI]
428
344
-
Tyr
GTA
[ENA]
¡û
>W1510099559
CELJ01000009
Bacillota
Paeniclostridium sordellii W2967 [CELJ]
3728
3812
+
Tyr
GTA
[ENA]
¡û
>W1510099592
CELJ01000013
Bacillota
Paeniclostridium sordellii W2967 [CELJ]
1572
1656
+
Tyr
GTA
[ENA]
¡û
>W1510099636
CELK01000083
Bacillota
Paeniclostridium sordellii W2922 [CELK]
629
713
+
Tyr
GTA
[ENA]
¡û
>W1510100434
CEMX01000008
Bacillota
Paeniclostridium sordellii R32462 [CEMX]
1068
1152
+
Tyr
GTA
[ENA]
¡û
>W1510100453
CEMX01000010
Bacillota
Paeniclostridium sordellii R32462 [CEMX]
1400
1316
-
Tyr
GTA
[ENA]
¡û
>W1510100498
CEMY01000022
Bacillota
Paeniclostridium sordellii R29426 [CEMY]
2456
2372
-
Tyr
GTA
[ENA]
¡û
>W1510100523
CEMY01000023
Bacillota
Paeniclostridium sordellii R29426 [CEMY]
1238
1322
+
Tyr
GTA
[ENA]
¡û
>W1510100583
CENA01000024
Bacillota
Paeniclostridium sordellii W2946 [CENA]
1385
1301
-
Tyr
GTA
[ENA]
¡û
>W1510100606
CENA01000041
Bacillota
Paeniclostridium sordellii W2946 [CENA]
478
562
+
Tyr
GTA
[ENA]
¡û
>C10102812
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
3737393
3737309
-
Tyr
GTA
[Ensembl]
¡û
>W1511587972
LBBT01000135
Bacillota
Paraclostridium benzoelyticum JC272 [LBBT]
2602
2518
-
Tyr
GTA
[ENA]
¡û
>W1511588003
LBBT01000167
Bacillota
Paraclostridium benzoelyticum JC272 [LBBT]
521
605
+
Tyr
GTA
[ENA]
¡û
>W1511588023
LBBT01000246
Bacillota
Paraclostridium benzoelyticum JC272 [LBBT]
834
918
+
Tyr
GTA
[ENA]
¡û
>W11184316
BABR01000312
Bacillota
Clostridium cellulovorans 743B [BABR]
42017
41933
-
Tyr
GTA
[ENA]
¡û
>W11184318
BABR01000312
Bacillota
Clostridium cellulovorans 743B [BABR]
41830
41746
-
Tyr
GTA
[ENA]
¡û
>C161105606
LN679998
Bacillota
Paeniclostridium sordellii ATCC 9714 [LN679998]
3381839
3381923
+
Tyr
GTA
-
¡û
>C161105713
LN681234
Bacillota
Paeniclostridium sordellii JGS6382 [LN681234]
3347227
3347143
-
Tyr
GTA
-
¡û
>C161105726
LN681234
Bacillota
Paeniclostridium sordellii JGS6382 [LN681234]
3340050
3339966
-
Tyr
GTA
-
¡û
>W1610005508
AJXR01001017
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
692
608
-
Tyr
GTA
[ENA]
¡û
>W1610005541
AJXR01001301
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
167
251
+
Tyr
GTA
[ENA]
¡û
>W1610005544
AJXR01001303
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
85
169
+
Tyr
GTA
[ENA]
¡û
>W1710005218
AJXR01001017
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
692
608
-
Tyr
GTA
[ENA]
¡û
>W1710005251
AJXR01001301
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
167
251
+
Tyr
GTA
[ENA]
¡û
>W1710005254
AJXR01001303
Bacillota
Paeniclostridium sordellii 8483 [AJXR]
85
169
+
Tyr
GTA
[ENA]
¡û
>W1710083356
BDJI01000002
Bacillota
Paeniclostridium sordellii [BDJI]
30431
30515
+
Tyr
GTA
[ENA]
¡û
>W1710083376
BDJI01000002
Bacillota
Paeniclostridium sordellii [BDJI]
32191
32275
+
Tyr
GTA
[ENA]
¡û
>W1710083427
BDJI01000002
Bacillota
Paeniclostridium sordellii [BDJI]
3406767
3406683
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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