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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95872 (63 seq.)
>W1710811901
LKIW01000095
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
617
701
+
Leu
CAA
[ENA]
¡û
>W1711005548
LQNP01000078
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
3562
3478
-
Leu
CAA
[ENA]
¡û
>W1711484444
MKCR01000027
Betaproteobacteria
Chromobacterium amazonense [MKCR]
157025
156941
-
Leu
CAA
[ENA]
¡û
>W1711484539
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
546589
546505
-
Leu
CAA
[ENA]
¡û
>W1711484564
MKCT01000001
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
481832
481916
+
Leu
CAA
[ENA]
¡û
>W1711664336
MQZX01000051
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
72541
72625
+
Leu
CAA
[ENA]
¡û
>W1711664370
MQZY01000040
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
130051
130135
+
Leu
CAA
[ENA]
¡û
>W1711664402
MQZZ01000040
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
130051
130135
+
Leu
CAA
[ENA]
¡û
>W1711747353
MUKQ01000003
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
205022
205106
+
Leu
CAA
[ENA]
¡û
>W1711747446
MUKR01000004
Betaproteobacteria
Chromobacterium violaceum [MUKR]
205022
205106
+
Leu
CAA
[ENA]
¡û
>W1711747552
MUKS01000010
Betaproteobacteria
Chromobacterium violaceum [MUKS]
43258
43342
+
Leu
CAA
[ENA]
¡û
>W1711747607
MUKT01000007
Betaproteobacteria
Chromobacterium haemolyticum [MUKT]
141383
141299
-
Leu
CAA
[ENA]
¡û
>W1711747650
MUKU01000004
Betaproteobacteria
Chromobacterium haemolyticum [MUKU]
89667
89751
+
Leu
CAA
[ENA]
¡û
>W1711747725
MUKV01000002
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
129295
129211
-
Leu
CAA
[ENA]
¡û
>W1711747861
MUKW01000016
Betaproteobacteria
Chromobacterium violaceum [MUKW]
25430
25514
+
Leu
CAA
[ENA]
¡û
>W1711747935
MUKX01000014
Betaproteobacteria
Chromobacterium violaceum [MUKX]
25430
25514
+
Leu
CAA
[ENA]
¡û
>W1712081909
NHOO01000001
Betaproteobacteria
Chromobacterium violaceum [NHOO]
218928
219012
+
Leu
CAA
[ENA]
¡û
>W1712110391
NJIE01000024
Betaproteobacteria
Xenophilus sp. AP218F [NJIE]
32975
33059
+
Leu
CAA
[ENA]
¡û
>C171066242
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
2601194
2601278
+
Leu
CAA
-
¡û
>C007366
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
682118
682034
-
Leu
CAA
[Ensembl]
¡û
>WENV180099418
NMRC01002986
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
391
307
-
Leu
CAA
[ENA]
¢þ
>W141106124
AVPH01000110
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
2336
2252
-
Leu
CAA
[ENA]
¡û
>W141169896
AXWS01000017
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
119283
119199
-
Leu
CAA
[ENA]
¡û
>W141251879
CBQY010000013
Betaproteobacteria
Kingella kingae AA417 [CBQY]
7919
7835
-
Leu
CAA
[ENA]
¡û
>W141253493
CBSI010000006
Betaproteobacteria
Kingella kingae KK145 [CBSI]
16074
15990
-
Leu
CAA
[ENA]
¡û
>W141253539
CBSJ010000005
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
17380
17296
-
Leu
CAA
[ENA]
¡û
>W141253718
CBSN010000013
Betaproteobacteria
Kingella kingae KK107 [CBSN]
7920
7836
-
Leu
CAA
[ENA]
¡û
>W141254664
CBTF010000010
Betaproteobacteria
Kingella kingae KK199 [CBTF]
15815
15731
-
Leu
CAA
[ENA]
¡û
>C181062359
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
587997
588081
+
Leu
CAA
-
¡û
>C181093251
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
632267
632183
-
Leu
CAA
-
¡û
>C181117101
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
5116133
5116049
-
Leu
CAA
-
¡û
>C181179608
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
1281137
1281221
+
Leu
CAA
-
¡û
>C181180282
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
2400395
2400479
+
Leu
CAA
-
¡û
>C191083710
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
4570091
4570175
+
Leu
CAA
-
¡û
>W141778970
JONK01000036
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
28793
28877
+
Leu
CAA
[ENA]
¡û
>W1910647294
LXRL01000024
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
17439
17355
-
Leu
CAA
[ENA]
¡û
>W1910803481
MTBD01000004
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
167889
167805
-
Leu
CAA
[ENA]
¡û
>W1810184670
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
2316711
2316795
+
Leu
CAA
[ENA]
¡û
>W1810483077
QARW01000002
Betaproteobacteria
Chromobacterium haemolyticum NRRL B-11053 [QARW]
2180460
2180544
+
Leu
CAA
[ENA]
¡û
>W1810483161
QARX01000001
Betaproteobacteria
Chromobacterium sp. Panama [QARX]
4402779
4402863
+
Leu
CAA
[ENA]
¡û
>W1511344525
JRFR01000001
Betaproteobacteria
Chromobacterium haemolyticum T124 [JRFR]
368501
368417
-
Leu
CAA
[ENA]
¡û
>W1511481036
JWJN01000038
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
43044
43128
+
Leu
CAA
[ENA]
¡û
>W1511484238
JWPW01000001
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
16117
16033
-
Leu
CAA
[ENA]
¡û
>W1511525798
JYGI01000003
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
16122
16038
-
Leu
CAA
[ENA]
¡û
>W1511544171
JZJJ01000048
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
470
386
-
Leu
CAA
[ENA]
¡û
>W1511544306
JZJL01000049
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
5839
5923
+
Leu
CAA
[ENA]
¡û
>W1511622822
LCWO01000015
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
89034
88950
-
Leu
CAA
[ENA]
¡û
>W1511622861
LCWP01000004
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
247747
247831
+
Leu
CAA
[ENA]
¡û
>W1511622933
LCWQ01000003
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
55788
55872
+
Leu
CAA
[ENA]
¡û
>W1511623060
LCWR01000240
Betaproteobacteria
Chromobacterium subtsugae MWU2387 [LCWR]
3772
3688
-
Leu
CAA
[ENA]
¡û
>W1511623062
LCWR01000278
Betaproteobacteria
Chromobacterium subtsugae MWU2387 [LCWR]
15
99
+
Leu
CAA
[ENA]
¡û
>W1511640583
LDUI01000028
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
972
888
-
Leu
CAA
[ENA]
¡û
>W1511640873
LDUM01000006
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
304815
304899
+
Leu
CAA
[ENA]
¡û
>W1511641266
LDUR01000009
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
100694
100610
-
Leu
CAA
[ENA]
¡û
>W1511641407
LDUT01000008
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
250872
250956
+
Leu
CAA
[ENA]
¡û
>W1511641553
LDUU01000021
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
148578
148494
-
Leu
CAA
[ENA]
¡û
>W1511641804
LDUX01000019
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
143565
143481
-
Leu
CAA
[ENA]
¡û
>W11187323
CAEE01000632
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
13310
13394
+
Leu
CAA
[ENA]
¡û
>W121126958
CAEE01000632
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
13310
13394
+
Leu
CAA
[ENA]
¡û
>W1610551490
JYKA01000004
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
204480
204564
+
Leu
CAA
[ENA]
¡û
>W1610675998
LKIW01000095
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
617
701
+
Leu
CAA
[ENA]
¡û
>W1610856198
LQNP01000078
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
3562
3478
-
Leu
CAA
[ENA]
¡û
>W1710661763
JYKA01000004
Betaproteobacteria
Chromobacterium subtsugae [JYKA]
204480
204564
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK