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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine microbial communities from Global Ocean Sampling (GOS)
Anticodon = AAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259573 (1 seq.)
>WENV057674
AACY023302556
Marine microbial communities from Global Ocean Sampling (GOS)
863
784
-
Val
AAC
[ENA]
Identical group No.326357 (2 seq.)
>WENV180364042
OBNZ01062873
[OBNZ] marine metagenome; ENVO:00002010
396
323
-
Val
AAC
[ENA]
¢þ
>WENV054986
AACY023206937
Marine microbial communities from Global Ocean Sampling (GOS)
168
244
+
Val
AAC
[ENA]
Identical group No.390471 (1 seq.)
>WENV057729
AACY023304751
Marine microbial communities from Global Ocean Sampling (GOS)
431
509
+
Val
AAC
[ENA]
Identical group No.390494 (1 seq.)
>WENV058287
AACY023323385
Marine microbial communities from Global Ocean Sampling (GOS)
1117
1039
-
Val
AAC
[ENA]
Identical group No.467190 (32 seq.)
>WENV180045248
MOXS02096008
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
274
202
-
Val
AAC
[ENA]
¢þ
>WENV180046453
MPLT02097582
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
105
177
+
Val
AAC
[ENA]
¢þ
>WENV180046559
MPLT02108015
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180047822
MPLT02271864
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
133
61
-
Val
AAC
[ENA]
¢þ
>WENV180053003
MPLU02339490
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
338
410
+
Val
AAC
[ENA]
¢þ
>WENV180053028
MPLU02340760
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
374
446
+
Val
AAC
[ENA]
¢þ
>WENV180107525
OAPF01225546
[OAPF] marine metagenome; ENVO:00002010
219
293
+
Val
AAC
[ENA]
¢þ
>WENV180356738
OBNL01015127
[OBNL] marine metagenome; ENVO:00002010
410
482
+
Val
AAC
[ENA]
¢þ
>WENV180383202
OBOU01009566
[OBOU] marine metagenome; ENV:00002010
317
389
+
Val
AAC
[ENA]
¢þ
>WENV180383962
OBOV01109520
[OBOV] marine metagenome; ENV:00002010
371
299
-
Val
AAC
[ENA]
¢þ
>WENV180386079
OBPB01031517
[OBPB] marine metagenome; Sterile flask
376
304
-
Val
AAC
[ENA]
¢þ
>WENV180588808
OCOQ01000554
[OCOQ] marine metagenome; ENVO:00002010
918
990
+
Val
AAC
[ENA]
¢þ
>WENV180641744
OCRN01034161
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
249
177
-
Val
AAC
[ENA]
¢þ
>WENV180650224
OCSY01000236
[OCSY] marine metagenome; 30 L Plastic container
1097
1025
-
Val
AAC
[ENA]
¢þ
>WENV181325114
OFLI01007120
[OFLI] seawater metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>WENV181385653
OFRJ01004008
[OFRJ] marine metagenome; seawater
126
198
+
Val
AAC
[ENA]
¢þ
>WENV182550563
OJCA01010216
[OJCA] seawater metagenome; Sea water
1003
1076
+
Val
AAC
[ENA]
¢þ
>WENV182551369
OJCC01003442
[OJCC] seawater metagenome; Sea water
583
655
+
Val
AAC
[ENA]
¢þ
>WENV182552852
OJCQ01001327
[OJCQ] seawater metagenome; Sea water
526
454
-
Val
AAC
[ENA]
¢þ
>WENV182554354
OJCU01002022
[OJCU] seawater metagenome; Sea water
948
876
-
Val
AAC
[ENA]
¢þ
>WENV182559200
OJDO01003867
[OJDO] seawater metagenome; Sea water
1907
1979
+
Val
AAC
[ENA]
¢þ
>WENV182570890
OJFF01006604
[OJFF] seawater metagenome; Sea water
343
415
+
Val
AAC
[ENA]
¢þ
>WENV183054279
OLGT01000031
[OLGT] seawater metagenome; Sea water
2623
2551
-
Val
AAC
[ENA]
¢þ
>WENV183618562
OOFO01007164
[OOFO] marine metagenome; seawater
664
592
-
Val
AAC
[ENA]
¢þ
>ENV08000375
ABMC01057596
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
31
103
+
Val
AAC
[ENA]
¡û
>WENV183699825
OZSS01055898
[OZSS] metagenome; Seawater sample
751
823
+
Val
AAC
[ENA]
¢þ
>WENV183797152
PVBE010307997
[PVBE] marine metagenome; water
133
61
-
Val
AAC
[ENA]
¢þ
>WENV170569434
FLMP01203768
[FLMP] seawater metagenome; seawater
59
131
+
Val
AAC
[ENA]
¢þ
>WENV170569657
FLMP01263781
[FLMP] seawater metagenome; seawater
133
205
+
Val
AAC
[ENA]
¢þ
>SRA1000349
SRR001041.176137
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
31
103
+
Val
AAC
[SRA]
>WENV027941
AACY021084539
Marine microbial communities from Global Ocean Sampling (GOS)
331
406
+
Val
AAC
[ENA]
>WENV038071
AACY021905801
Marine microbial communities from Global Ocean Sampling (GOS)
228
153
-
Val
AAC
[ENA]
Identical group No.467634 (59 seq.)
>WENV180100881
OAOT01005385
[OAOT] marine metagenome; Mesotrophic water
520
448
-
Val
AAC
[ENA]
¢þ
>WENV180104124
OAPB01087430
[OAPB] marine metagenome; Sterile flask
158
84
-
Val
AAC
[ENA]
¢þ
>WENV180109908
OAPL01008530
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
147
221
+
Val
AAC
[ENA]
¢þ
>WENV180214742
OBAP01060935
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
302
374
+
Val
AAC
[ENA]
¢þ
>WENV180362075
OBNW01031667
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
118
46
-
Val
AAC
[ENA]
¢þ
>WENV180387530
OBPF01007053
[OBPF] marine metagenome; Sterile flask
434
508
+
Val
AAC
[ENA]
¢þ
>WENV180390143
OBPK01033424
[OBPK] marine metagenome; Sterile flask
455
527
+
Val
AAC
[ENA]
¢þ
>WENV180392787
OBPP01010455
[OBPP] marine metagenome; ENVO:00002042
232
304
+
Val
AAC
[ENA]
¢þ
>WENV180395944
OBPU01002196
[OBPU] marine metagenome; ENVO:00002010
341
267
-
Val
AAC
[ENA]
¢þ
>WENV180398587
OBQA01063887
[OBQA] marine metagenome; PVDF and polycarbonate filters
291
219
-
Val
AAC
[ENA]
¢þ
>WENV180398925
OBQE01000157
[OBQE] marine metagenome; ENVO.00002150
1098
1026
-
Val
AAC
[ENA]
¢þ
>WENV180589873
OCOS01028917
[OCOS] marine metagenome; Sterile flask
391
465
+
Val
AAC
[ENA]
¢þ
>WENV180595630
OCPE01024714
[OCPE] marine metagenome; ENVO.00002150
122
50
-
Val
AAC
[ENA]
¢þ
>WENV180636793
OCRF01063454
[OCRF] marine metagenome; niskin bottle
281
209
-
Val
AAC
[ENA]
¢þ
>WENV180637203
OCRG01002801
[OCRG] marine metagenome; seawater
1
73
+
Val
AAC
[ENA]
¢þ
>WENV180637349
OCRG01011176
[OCRG] marine metagenome; seawater
280
208
-
Val
AAC
[ENA]
¢þ
>WENV180637918
OCRG01193917
[OCRG] marine metagenome; seawater
1
73
+
Val
AAC
[ENA]
¢þ
>WENV180650376
OCSY01014077
[OCSY] marine metagenome; 30 L Plastic container
395
321
-
Val
AAC
[ENA]
¢þ
>WENV181391760
OFRU01000577
[OFRU] freshwater metagenome; Freshwater Lake
684
756
+
Val
AAC
[ENA]
¢þ
>WENV181395859
OFSB01011721
[OFSB] freshwater metagenome; Freshwater Lake
555
483
-
Val
AAC
[ENA]
¢þ
>WENV182540522
OJAJ01006827
[OJAJ] seawater metagenome; Sea water
611
683
+
Val
AAC
[ENA]
¢þ
>WENV182540888
OJAQ01000284
[OJAQ] seawater metagenome; Sea water
2834
2906
+
Val
AAC
[ENA]
¢þ
>WENV182542217
OJAV01013702
[OJAV] seawater metagenome; Sea water
419
491
+
Val
AAC
[ENA]
¢þ
>WENV182544314
OJBF01004744
[OJBF] seawater metagenome; Sea water
387
315
-
Val
AAC
[ENA]
¢þ
>WENV182545484
OJBN01004206
[OJBN] seawater metagenome; Sea water
616
688
+
Val
AAC
[ENA]
¢þ
>WENV182550028
OJBZ01001752
[OJBZ] seawater metagenome; Sea water
4800
4728
-
Val
AAC
[ENA]
¢þ
>WENV182552122
OJCJ01008108
[OJCJ] seawater metagenome; Sea water
1253
1325
+
Val
AAC
[ENA]
¢þ
>WENV182553025
OJCQ01013548
[OJCQ] seawater metagenome; Sea water
153
225
+
Val
AAC
[ENA]
¢þ
>WENV182556558
OJDG01017135
[OJDG] seawater metagenome; Sea water
600
674
+
Val
AAC
[ENA]
¢þ
>WENV182557178
OJDI01001781
[OJDI] seawater metagenome; Sea water
4999
4927
-
Val
AAC
[ENA]
¢þ
>WENV182558591
OJDM01022874
[OJDM] seawater metagenome; Sea water
535
463
-
Val
AAC
[ENA]
¢þ
>WENV182561696
OJDX01000682
[OJDX] seawater metagenome; Sea water
2068
1996
-
Val
AAC
[ENA]
¢þ
>WENV182561973
OJDY01000567
[OJDY] seawater metagenome; Sea water
615
687
+
Val
AAC
[ENA]
¢þ
>WENV182563357
OJEB01013620
[OJEB] seawater metagenome; Sea water
429
501
+
Val
AAC
[ENA]
¢þ
>WENV182563485
OJEC01001130
[OJEC] seawater metagenome; Sea water
2640
2712
+
Val
AAC
[ENA]
¢þ
>WENV182564164
OJEE01000330
[OJEE] seawater metagenome; Sea water
5726
5654
-
Val
AAC
[ENA]
¢þ
>WENV182566392
OJEL01000125
[OJEL] seawater metagenome; Sea water
4329
4257
-
Val
AAC
[ENA]
¢þ
>WENV182569135
OJEY01000949
[OJEY] seawater metagenome; Sea water
3908
3836
-
Val
AAC
[ENA]
¢þ
>WENV182569827
OJFB01000737
[OJFB] seawater metagenome; Sea water
4635
4563
-
Val
AAC
[ENA]
¢þ
>WENV182573839
OJFQ01000496
[OJFQ] seawater metagenome; Sea water
768
840
+
Val
AAC
[ENA]
¢þ
>WENV182576627
OJFY01000573
[OJFY] seawater metagenome; Sea water
4355
4283
-
Val
AAC
[ENA]
¢þ
>WENV182578064
OJGM01001281
[OJGM] seawater metagenome; Sea water
2540
2468
-
Val
AAC
[ENA]
¢þ
>WENV182582153
OJHA01000399
[OJHA] seawater metagenome; Sea water
3823
3895
+
Val
AAC
[ENA]
¢þ
>WENV182582528
OJHB01001166
[OJHB] seawater metagenome; Sea water
616
688
+
Val
AAC
[ENA]
¢þ
>WENV182583214
OJHD01001277
[OJHD] seawater metagenome; Sea water
616
688
+
Val
AAC
[ENA]
¢þ
>WENV182587751
OJHN01004319
[OJHN] seawater metagenome; Sea water
1190
1118
-
Val
AAC
[ENA]
¢þ
>WENV183054008
OLGR01005506
[OLGR] seawater metagenome; Sea water
740
812
+
Val
AAC
[ENA]
¢þ
>WENV183054656
OLGU01000912
[OLGU] seawater metagenome; Sea water
2830
2758
-
Val
AAC
[ENA]
¢þ
>WENV183059035
OLHS01001698
[OLHS] seawater metagenome; Sea water
527
599
+
Val
AAC
[ENA]
¢þ
>WENV183059507
OLHU01011714
[OLHU] seawater metagenome; Sea water
409
481
+
Val
AAC
[ENA]
¢þ
>WENV183060019
OLHW01004694
[OLHW] seawater metagenome; Sea water
75
147
+
Val
AAC
[ENA]
¢þ
>WENV183060332
OLHX01003412
[OLHX] seawater metagenome; Sea water
261
189
-
Val
AAC
[ENA]
¢þ
>WENV170138679
CENW01138462
[CENW] marine metagenome genome assembly TARA_032_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1349
1277
-
Val
AAC
[ENA]
¢þ
>WENV170565174
FAOX01026874
[FAOX] marine metagenome; seawater
168
240
+
Val
AAC
[ENA]
¢þ
>WENV170617281
FUWD012920442
[FUWD] metagenome; unknown
175
249
+
Val
AAC
[ENA]
¢þ
>WENV170617539
FUWD012929171
[FUWD] metagenome; unknown
467
395
-
Val
AAC
[ENA]
¢þ
>WENV170625237
FUWD013193908
[FUWD] metagenome; unknown
350
278
-
Val
AAC
[ENA]
¢þ
>WENV170698709
LGVF01398559
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
669
597
-
Val
AAC
[ENA]
¢þ
>WENV074535
AACY023981616
Marine microbial communities from Global Ocean Sampling (GOS)
719
794
+
Val
AAC
[ENA]
Identical group No.583498 (1 seq.)
>WENV028407
AACY021119417
Marine microbial communities from Global Ocean Sampling (GOS)
959
884
-
Val
AAC
[ENA]
Identical group No.583608 (1 seq.)
>WENV032414
AACY021445582
Marine microbial communities from Global Ocean Sampling (GOS)
120
195
+
Val
AAC
[ENA]
Identical group No.583946 (1 seq.)
>WENV044759
AACY022450757
Marine microbial communities from Global Ocean Sampling (GOS)
611
686
+
Val
AAC
[ENA]
Identical group No.584315 (1 seq.)
>WENV058516
AACY023331805
Marine microbial communities from Global Ocean Sampling (GOS)
476
553
+
Val
AAC
[ENA]
Identical group No.584336 (1 seq.)
>WENV058772
AACY023340965
Marine microbial communities from Global Ocean Sampling (GOS)
521
444
-
Val
AAC
[ENA]
Identical group No.732927 (1 seq.)
>WENV023930
AACY020766392
Marine microbial communities from Global Ocean Sampling (GOS)
300
226
-
Val
AAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK