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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CAA
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.29540 (6 seq.)
>WENV170620179
FUWD013026865
[FUWD] metagenome; unknown
6410
6499
+
Leu
CAA
[ENA]
¢þ
>WENV170628315
FUWD013244687
[FUWD] metagenome; unknown
6410
6499
+
Leu
CAA
[ENA]
¢þ
>SRA1026080
SRR035085.139674
454 Sequencing (SRP001806)
133
44
-
Leu
CAA
[SRA]
>SRA1026102
SRR035085.143604
454 Sequencing (SRP001806)
133
44
-
Leu
CAA
[SRA]
>SRA1041806
SRR035091.297564
454 Sequencing (SRP001812)
226
137
-
Leu
CAA
[SRA]
>SRA1048859
SRR035094.265095
454 Sequencing (SRP001815)
158
247
+
Leu
CAA
[SRA]
Identical group No.46721 (10 seq.)
>WENV170621357
FUWD013056597
[FUWD] metagenome; unknown
842
930
+
Leu
CAA
[ENA]
¢þ
>WENV170629536
FUWD013273001
[FUWD] metagenome; unknown
842
930
+
Leu
CAA
[ENA]
¢þ
>SRA1017677
SRR035082.179412
454 Sequencing (SRP001803)
400
488
+
Leu
CAA
[SRA]
>SRA1018518
SRR035082.303820
454 Sequencing (SRP001803)
509
421
-
Leu
CAA
[SRA]
>SRA1026139
SRR035085.151257
454 Sequencing (SRP001806)
375
287
-
Leu
CAA
[SRA]
>SRA1026648
SRR035085.249103
454 Sequencing (SRP001806)
375
287
-
Leu
CAA
[SRA]
>SRA1029040
SRR035087.64053
454 Sequencing (SRP001808)
436
348
-
Leu
CAA
[SRA]
>SRA1029298
SRR035087.104584
454 Sequencing (SRP001808)
438
350
-
Leu
CAA
[SRA]
>SRA1035824
SRR035089.383553
454 Sequencing (SRP001810)
198
110
-
Leu
CAA
[SRA]
>SRA1048707
SRR035094.232403
454 Sequencing (SRP001815)
187
275
+
Leu
CAA
[SRA]
Identical group No.46728 (6 seq.)
>WENV170621236
FUWD013053264
[FUWD] metagenome; unknown
976
888
-
Leu
CAA
[ENA]
¢þ
>WENV170629416
FUWD013269765
[FUWD] metagenome; unknown
976
888
-
Leu
CAA
[ENA]
¢þ
>WENV170693689
LGVC01043428
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
989
901
-
Leu
CAA
[ENA]
¢þ
>SRA1026710
SRR035085.267646
454 Sequencing (SRP001806)
223
135
-
Leu
CAA
[SRA]
>SRA1035823
SRR035089.383017
454 Sequencing (SRP001810)
104
16
-
Leu
CAA
[SRA]
>SRA1036724
SRR035089.595065
454 Sequencing (SRP001810)
230
142
-
Leu
CAA
[SRA]
Identical group No.56217 (1 seq.)
>SRA1025779
SRR035085.81594
454 Sequencing (SRP001806)
313
229
-
Leu
CAA
[SRA]
Identical group No.56227 (1 seq.)
>SRA1026175
SRR035085.157891
454 Sequencing (SRP001806)
76
163
+
Leu
CAA
[SRA]
Identical group No.73247 (10 seq.)
>WENV170623282
FUWD013144322
[FUWD] metagenome; unknown
727
813
+
Leu
CAA
[ENA]
¢þ
>WENV170623297
FUWD013144967
[FUWD] metagenome; unknown
1093
1007
-
Leu
CAA
[ENA]
¢þ
>WENV170631541
FUWD013356340
[FUWD] metagenome; unknown
727
813
+
Leu
CAA
[ENA]
¢þ
>WENV170631558
FUWD013356956
[FUWD] metagenome; unknown
1093
1007
-
Leu
CAA
[ENA]
¢þ
>SRA1025643
SRR035085.55437
454 Sequencing (SRP001806)
322
408
+
Leu
CAA
[SRA]
>SRA1026031
SRR035085.130854
454 Sequencing (SRP001806)
92
178
+
Leu
CAA
[SRA]
>SRA1030735
SRR035087.322470
454 Sequencing (SRP001808)
353
267
-
Leu
CAA
[SRA]
>SRA1034526
SRR035089.115747
454 Sequencing (SRP001810)
5
91
+
Leu
CAA
[SRA]
>SRA1035673
SRR035089.352504
454 Sequencing (SRP001810)
360
446
+
Leu
CAA
[SRA]
>SRA1043019
SRR035092.22698
454 Sequencing (SRP001813)
114
28
-
Leu
CAA
[SRA]
Identical group No.73252 (8 seq.)
>WENV170612316
FUWD012571277
[FUWD] metagenome; unknown
267
353
+
Leu
CAA
[ENA]
¢þ
>WENV170617217
FUWD012918475
[FUWD] metagenome; unknown
402
488
+
Leu
CAA
[ENA]
¢þ
>WENV170627215
FUWD013232105
[FUWD] metagenome; unknown
12724
12810
+
Leu
CAA
[ENA]
¢þ
>WENV170632904
FUWD013388446
[FUWD] metagenome; unknown
12724
12810
+
Leu
CAA
[ENA]
¢þ
>SRA1025737
SRR035085.73260
454 Sequencing (SRP001806)
76
162
+
Leu
CAA
[SRA]
>SRA1035263
SRR035089.270515
454 Sequencing (SRP001810)
221
307
+
Leu
CAA
[SRA]
>SRA1048239
SRR035094.132666
454 Sequencing (SRP001815)
147
61
-
Leu
CAA
[SRA]
>SRA1050276
SRR035095.227580
454 Sequencing (SRP001816)
283
197
-
Leu
CAA
[SRA]
Identical group No.73255 (2 seq.)
>WENV170613233
FUWD012791329
[FUWD] metagenome; unknown
103
187
+
Leu
CAA
[ENA]
¢þ
>SRA1025956
SRR035085.116283
454 Sequencing (SRP001806)
332
248
-
Leu
CAA
[SRA]
Identical group No.73256 (2 seq.)
>SRA1026019
SRR035085.127558
454 Sequencing (SRP001806)
262
348
+
Leu
CAA
[SRA]
>SRA1035920
SRR035089.404113
454 Sequencing (SRP001810)
412
326
-
Leu
CAA
[SRA]
Identical group No.73266 (3 seq.)
>SRA1026307
SRR035085.183049
454 Sequencing (SRP001806)
244
330
+
Leu
CAA
[SRA]
>SRA1026601
SRR035085.237665
454 Sequencing (SRP001806)
243
329
+
Leu
CAA
[SRA]
>SRA1032742
SRR035088.92700
454 Sequencing (SRP001809)
49
135
+
Leu
CAA
[SRA]
Identical group No.73272 (2 seq.)
>WENV181413325
OGCK01053336
[OGCK] hot springs metagenome; hot spring sediment
246
160
-
Leu
CAA
[ENA]
¢þ
>SRA1026580
SRR035085.232569
454 Sequencing (SRP001806)
371
455
+
Leu
CAA
[SRA]
Identical group No.73275 (1 seq.)
>SRA1026643
SRR035085.247717
454 Sequencing (SRP001806)
77
162
+
Leu
CAA
[SRA]
Identical group No.99995 (1 seq.)
>SRA1025644
SRR035085.55528
454 Sequencing (SRP001806)
113
31
-
Leu
CAA
[SRA]
Identical group No.99998 (1 seq.)
>SRA1025769
SRR035085.80118
454 Sequencing (SRP001806)
240
325
+
Leu
CAA
[SRA]
Identical group No.100000 (1 seq.)
>SRA1025810
SRR035085.87490
454 Sequencing (SRP001806)
269
352
+
Leu
CAA
[SRA]
Identical group No.100006 (2 seq.)
>WENV170605054
FUWD010444786
[FUWD] metagenome; unknown
6
91
+
Leu
CAA
[ENA]
¢þ
>SRA1026063
SRR035085.134848
454 Sequencing (SRP001806)
230
315
+
Leu
CAA
[SRA]
Identical group No.100015 (3 seq.)
>WENV183512842
OMKS01001539
[OMKS] sediment metagenome; hot spring sediment
234
152
-
Leu
CAA
[ENA]
¢þ
>WENV183515573
OMKS01074323
[OMKS] sediment metagenome; hot spring sediment
733
651
-
Leu
CAA
[ENA]
¢þ
>SRA1026498
SRR035085.217034
454 Sequencing (SRP001806)
157
242
+
Leu
CAA
[SRA]
Identical group No.117988 (3 seq.)
>WENV170612476
FUWD012620146
[FUWD] metagenome; unknown
95
179
+
Leu
CAA
[ENA]
¢þ
>SRA1026032
SRR035085.130881
454 Sequencing (SRP001806)
485
403
-
Leu
CAA
[SRA]
>SRA1032291
SRR035087.596869
454 Sequencing (SRP001808)
235
151
-
Leu
CAA
[SRA]
Identical group No.118006 (3 seq.)
>WENV170607862
FUWD010862434
[FUWD] metagenome; unknown
86
1
-
Leu
CAA
[ENA]
¢þ
>WENV170974872
MTKY01078937
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2481
2563
+
Leu
CAA
[ENA]
¢þ
>SRA1026586
SRR035085.233360
454 Sequencing (SRP001806)
125
40
-
Leu
CAA
[SRA]
Identical group No.118008 (1 seq.)
>SRA1026657
SRR035085.251280
454 Sequencing (SRP001806)
265
349
+
Leu
CAA
[SRA]
Identical group No.177298 (1 seq.)
>SRA1025533
SRR035085.34839
454 Sequencing (SRP001806)
200
276
+
Leu
CAA
[SRA]
Identical group No.282124 (1 seq.)
>SRA1026584
SRR035085.233255
454 Sequencing (SRP001806)
244
172
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK