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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = CGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1711 (2 seq.)
>WENV170609227
FUWD011328640
[FUWD] metagenome; unknown
100
4
-
Ser
CGA
[ENA]
¢þ
>SRA1025625
SRR035085.52262
454 Sequencing (SRP001806)
260
164
-
Ser
CGA
[SRA]
Identical group No.5743 (5 seq.)
>WENV170621152
FUWD013050330
[FUWD] metagenome; unknown
2435
2341
-
Ser
CGA
[ENA]
¢þ
>WENV170629320
FUWD013266969
[FUWD] metagenome; unknown
2435
2341
-
Ser
CGA
[ENA]
¢þ
>SRA1025595
SRR035085.44560
454 Sequencing (SRP001806)
221
315
+
Ser
CGA
[SRA]
>SRA1026801
SRR035085.294310
454 Sequencing (SRP001806)
93
187
+
Ser
CGA
[SRA]
>SRA1030086
SRR035087.226002
454 Sequencing (SRP001808)
224
130
-
Ser
CGA
[SRA]
Identical group No.8251 (18 seq.)
>WENV170599776
FUWD010091905
[FUWD] metagenome; unknown
98
5
-
Ser
CGA
[ENA]
¢þ
>WENV170616560
FUWD012891147
[FUWD] metagenome; unknown
3496
3403
-
Ser
CGA
[ENA]
¢þ
>SRA1026001
SRR035085.124619
454 Sequencing (SRP001806)
279
372
+
Ser
CGA
[SRA]
>SRA1026239
SRR035085.169498
454 Sequencing (SRP001806)
132
39
-
Ser
CGA
[SRA]
>SRA1026398
SRR035085.201684
454 Sequencing (SRP001806)
405
312
-
Ser
CGA
[SRA]
>SRA1026449
SRR035085.208930
454 Sequencing (SRP001806)
269
362
+
Ser
CGA
[SRA]
>SRA1026755
SRR035085.280550
454 Sequencing (SRP001806)
44
137
+
Ser
CGA
[SRA]
>SRA1029042
SRR035087.64489
454 Sequencing (SRP001808)
411
318
-
Ser
CGA
[SRA]
>SRA1029458
SRR035087.130270
454 Sequencing (SRP001808)
177
84
-
Ser
CGA
[SRA]
>SRA1030801
SRR035087.333235
454 Sequencing (SRP001808)
100
193
+
Ser
CGA
[SRA]
>SRA1030953
SRR035087.354145
454 Sequencing (SRP001808)
412
319
-
Ser
CGA
[SRA]
>SRA1032293
SRR035087.596928
454 Sequencing (SRP001808)
397
304
-
Ser
CGA
[SRA]
>SRA1035834
SRR035089.384851
454 Sequencing (SRP001810)
232
139
-
Ser
CGA
[SRA]
>SRA1036006
SRR035089.425438
454 Sequencing (SRP001810)
164
71
-
Ser
CGA
[SRA]
>SRA1049066
SRR035095.13633
454 Sequencing (SRP001816)
168
75
-
Ser
CGA
[SRA]
>SRA1049187
SRR035095.34347
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1049747
SRR035095.132861
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1050288
SRR035095.232058
454 Sequencing (SRP001816)
188
95
-
Ser
CGA
[SRA]
Identical group No.19917 (3 seq.)
>WENV170603284
FUWD010298735
[FUWD] metagenome; unknown
476
386
-
Ser
CGA
[ENA]
¢þ
>WENV170607860
FUWD010862341
[FUWD] metagenome; unknown
2
92
+
Ser
CGA
[ENA]
¢þ
>SRA1026547
SRR035085.225665
454 Sequencing (SRP001806)
12
102
+
Ser
CGA
[SRA]
Identical group No.30412 (4 seq.)
>WENV170622229
FUWD013093573
[FUWD] metagenome; unknown
96
8
-
Ser
CGA
[ENA]
¢þ
>WENV170630433
FUWD013308435
[FUWD] metagenome; unknown
2412
2500
+
Ser
CGA
[ENA]
¢þ
>SRA1018316
SRR035082.272392
454 Sequencing (SRP001803)
283
195
-
Ser
CGA
[SRA]
>SRA1026695
SRR035085.262187
454 Sequencing (SRP001806)
205
293
+
Ser
CGA
[SRA]
Identical group No.45841 (6 seq.)
>WENV170608204
FUWD010902019
[FUWD] metagenome; unknown
156
243
+
Ser
CGA
[ENA]
¢þ
>SRA1025457
SRR035085.11945
454 Sequencing (SRP001806)
55
142
+
Ser
CGA
[SRA]
>SRA1025468
SRR035085.16931
454 Sequencing (SRP001806)
55
142
+
Ser
CGA
[SRA]
>SRA1025499
SRR035085.25691
454 Sequencing (SRP001806)
55
142
+
Ser
CGA
[SRA]
>SRA1025502
SRR035085.26760
454 Sequencing (SRP001806)
56
143
+
Ser
CGA
[SRA]
>SRA1047793
SRR035094.42303
454 Sequencing (SRP001815)
166
253
+
Ser
CGA
[SRA]
Identical group No.72767 (2 seq.)
>WENV170611869
FUWD012425519
[FUWD] metagenome; unknown
175
87
-
Ser
CGA
[ENA]
¢þ
>SRA1026226
SRR035085.166916
454 Sequencing (SRP001806)
185
97
-
Ser
CGA
[SRA]
Identical group No.153850 (5 seq.)
>WENV170612628
FUWD012647709
[FUWD] metagenome; unknown
210
125
-
Ser
CGA
[ENA]
¢þ
>SRA1025875
SRR035085.100213
454 Sequencing (SRP001806)
318
233
-
Ser
CGA
[SRA]
>SRA1042615
SRR035091.416982
454 Sequencing (SRP001812)
118
33
-
Ser
CGA
[SRA]
>SRA1043857
SRR035092.186801
454 Sequencing (SRP001813)
210
125
-
Ser
CGA
[SRA]
>SRA1048955
SRR035094.296413
454 Sequencing (SRP001815)
114
199
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK