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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = GGA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2476 (1 seq.)
>SRA1025966
SRR035085.118620
454 Sequencing (SRP001806)
204
109
-
Ser
GGA
[SRA]
Identical group No.4000 (2 seq.)
>SRA1025836
SRR035085.92221
454 Sequencing (SRP001806)
203
109
-
Ser
GGA
[SRA]
>SRA1026688
SRR035085.261271
454 Sequencing (SRP001806)
163
257
+
Ser
GGA
[SRA]
Identical group No.5711 (4 seq.)
>SRA1025724
SRR035085.71529
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1025860
SRR035085.95989
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1026173
SRR035085.157749
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
>SRA1026392
SRR035085.200327
454 Sequencing (SRP001806)
35
128
+
Ser
GGA
[SRA]
Identical group No.5714 (25 seq.)
>W1711410991
MGQV01000087
Unclassified
Deltaproteobacteria bacterium RBG_16_58_17 [MGQV]
50737
50830
+
Ser
GGA
[ENA]
¡û
>WENV180371099
OBOI01000343
[OBOI] sediment metagenome; sediment
16197
16104
-
Ser
GGA
[ENA]
¢þ
>WENV183514262
OMKS01014541
[OMKS] sediment metagenome; hot spring sediment
4204
4111
-
Ser
GGA
[ENA]
¢þ
>WENV183660559
ORJL010033191
[ORJL] groundwater metagenome; groundwater
9193
9286
+
Ser
GGA
[ENA]
¢þ
>WENV183666133
ORJL010523764
[ORJL] groundwater metagenome; groundwater
213
120
-
Ser
GGA
[ENA]
¢þ
>WENV170616561
FUWD012891147
[FUWD] metagenome; unknown
3385
3292
-
Ser
GGA
[ENA]
¢þ
>WENV170624458
FUWD013181995
[FUWD] metagenome; unknown
3867
3774
-
Ser
GGA
[ENA]
¢þ
>WENV170632743
FUWD013386851
[FUWD] metagenome; unknown
3867
3774
-
Ser
GGA
[ENA]
¢þ
>WENV170640606
JFJP01023139
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2804
2897
+
Ser
GGA
[ENA]
¢þ
>SRA1025784
SRR035085.82861
454 Sequencing (SRP001806)
500
407
-
Ser
GGA
[SRA]
>SRA1025924
SRR035085.111062
454 Sequencing (SRP001806)
500
407
-
Ser
GGA
[SRA]
>SRA1025941
SRR035085.113912
454 Sequencing (SRP001806)
28
121
+
Ser
GGA
[SRA]
>SRA1026399
SRR035085.201684
454 Sequencing (SRP001806)
293
200
-
Ser
GGA
[SRA]
>SRA1026450
SRR035085.208930
454 Sequencing (SRP001806)
379
472
+
Ser
GGA
[SRA]
>SRA1026756
SRR035085.280550
454 Sequencing (SRP001806)
153
246
+
Ser
GGA
[SRA]
>SRA1029043
SRR035087.64489
454 Sequencing (SRP001808)
300
207
-
Ser
GGA
[SRA]
>SRA1030539
SRR035087.292265
454 Sequencing (SRP001808)
355
262
-
Ser
GGA
[SRA]
>SRA1030849
SRR035087.338799
454 Sequencing (SRP001808)
68
161
+
Ser
GGA
[SRA]
>SRA1030954
SRR035087.354145
454 Sequencing (SRP001808)
301
208
-
Ser
GGA
[SRA]
>SRA1032294
SRR035087.596928
454 Sequencing (SRP001808)
288
195
-
Ser
GGA
[SRA]
>SRA1035835
SRR035089.384851
454 Sequencing (SRP001810)
122
29
-
Ser
GGA
[SRA]
>SRA1048013
SRR035094.88403
454 Sequencing (SRP001815)
62
155
+
Ser
GGA
[SRA]
>SRA1048138
SRR035094.114951
454 Sequencing (SRP001815)
419
326
-
Ser
GGA
[SRA]
>SRA1048518
SRR035094.192397
454 Sequencing (SRP001815)
21
114
+
Ser
GGA
[SRA]
>SRA1049989
SRR035095.172233
454 Sequencing (SRP001816)
224
317
+
Ser
GGA
[SRA]
Identical group No.5717 (4 seq.)
>WENV170621153
FUWD013050330
[FUWD] metagenome; unknown
2196
2103
-
Ser
GGA
[ENA]
¢þ
>WENV170629321
FUWD013266969
[FUWD] metagenome; unknown
2196
2103
-
Ser
GGA
[ENA]
¢þ
>SRA1025977
SRR035085.120159
454 Sequencing (SRP001806)
439
346
-
Ser
GGA
[SRA]
>SRA1035591
SRR035089.336393
454 Sequencing (SRP001810)
425
332
-
Ser
GGA
[SRA]
Identical group No.5721 (6 seq.)
>WENV170622223
FUWD013093481
[FUWD] metagenome; unknown
992
899
-
Ser
GGA
[ENA]
¢þ
>WENV170630427
FUWD013308347
[FUWD] metagenome; unknown
992
899
-
Ser
GGA
[ENA]
¢þ
>SRA1017869
SRR035082.208572
454 Sequencing (SRP001803)
262
169
-
Ser
GGA
[SRA]
>SRA1026512
SRR035085.219131
454 Sequencing (SRP001806)
177
84
-
Ser
GGA
[SRA]
>SRA1033325
SRR035088.225066
454 Sequencing (SRP001809)
106
13
-
Ser
GGA
[SRA]
>SRA1033462
SRR035088.264441
454 Sequencing (SRP001809)
106
13
-
Ser
GGA
[SRA]
Identical group No.8556 (2 seq.)
>WENV170593586
FUFK010920233
[FUFK] metagenome; unknown
108
16
-
Ser
GGA
[ENA]
¢þ
>SRA1026578
SRR035085.232254
454 Sequencing (SRP001806)
406
314
-
Ser
GGA
[SRA]
Identical group No.20314 (5 seq.)
>WENV170612266
FUWD012558438
[FUWD] metagenome; unknown
91
2
-
Ser
GGA
[ENA]
¢þ
>SRA1025604
SRR035085.48399
454 Sequencing (SRP001806)
126
37
-
Ser
GGA
[SRA]
>SRA1026053
SRR035085.132566
454 Sequencing (SRP001806)
142
53
-
Ser
GGA
[SRA]
>SRA1034449
SRR035089.99218
454 Sequencing (SRP001810)
169
80
-
Ser
GGA
[SRA]
>SRA1034876
SRR035089.189678
454 Sequencing (SRP001810)
170
81
-
Ser
GGA
[SRA]
Identical group No.20318 (4 seq.)
>W1711393291
MEOL01000037
Bacteroidota
Bacteroidetes bacterium GWF2_41_31 [MEOL]
165100
165190
+
Ser
GGA
[ENA]
¡û
>W1711393723
MEPI01000108
Bacteroidota
Bacteroidetes bacterium RIFOXYB12_FULL_41_6 [MEPI]
4991
4901
-
Ser
GGA
[ENA]
¡û
>w006985
AAIC01000541
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
1420
1328
-
Ser
GGA
[ENA]
¡û
>SRA1026105
SRR035085.143912
454 Sequencing (SRP001806)
231
141
-
Ser
GGA
[SRA]
Identical group No.20323 (2 seq.)
>WENV170611860
FUWD012421685
[FUWD] metagenome; unknown
129
40
-
Ser
GGA
[ENA]
¢þ
>SRA1026771
SRR035085.285473
454 Sequencing (SRP001806)
240
151
-
Ser
GGA
[SRA]
Identical group No.29534 (21 seq.)
>WENV180083017
MPMD02003536
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
1367
1455
+
Ser
GGA
[ENA]
¢þ
>WENV170614418
FUWD012832932
[FUWD] metagenome; unknown
21691
21603
-
Ser
GGA
[ENA]
¢þ
>W1810523123
QCKE01000009
Cyanobacteriota
Prochlorococcus sp. AG-409-K04 [QCKE]
12413
12501
+
Ser
GGA
[ENA]
¡û
>SRA1025614
SRR035085.49843
454 Sequencing (SRP001806)
477
389
-
Ser
GGA
[SRA]
>SRA1026325
SRR035085.186129
454 Sequencing (SRP001806)
477
389
-
Ser
GGA
[SRA]
>SRA1027285
SRR035086.96252
454 Sequencing (SRP001807)
135
223
+
Ser
GGA
[SRA]
>SRA1028391
SRR035086.315406
454 Sequencing (SRP001807)
135
223
+
Ser
GGA
[SRA]
>SRA1029903
SRR035087.199088
454 Sequencing (SRP001808)
379
291
-
Ser
GGA
[SRA]
>SRA1031771
SRR035087.484749
454 Sequencing (SRP001808)
323
235
-
Ser
GGA
[SRA]
>SRA1034428
SRR035089.92081
454 Sequencing (SRP001810)
119
207
+
Ser
GGA
[SRA]
>SRA1050046
SRR035095.180811
454 Sequencing (SRP001816)
527
441
-
Ser
GGA
[SRA]
>SRA1051623
SRR035098.41716
454 Sequencing (SRP001819)
40
128
+
Ser
GGA
[SRA]
>SRA1051792
SRR035098.77554
454 Sequencing (SRP001819)
483
395
-
Ser
GGA
[SRA]
>SRA1052649
SRR035098.244446
454 Sequencing (SRP001819)
40
128
+
Ser
GGA
[SRA]
>SRA1053038
SRR035098.324163
454 Sequencing (SRP001819)
267
179
-
Ser
GGA
[SRA]
>SRA1053127
SRR035098.344767
454 Sequencing (SRP001819)
213
125
-
Ser
GGA
[SRA]
>SRA1053183
SRR035098.357641
454 Sequencing (SRP001819)
110
22
-
Ser
GGA
[SRA]
>SRA1053468
SRR035098.412397
454 Sequencing (SRP001819)
311
223
-
Ser
GGA
[SRA]
>SRA1053792
SRR035098.496549
454 Sequencing (SRP001819)
361
273
-
Ser
GGA
[SRA]
>SRA1053856
SRR035098.517315
454 Sequencing (SRP001819)
110
22
-
Ser
GGA
[SRA]
>W1511219348
JNBA01000039
Cyanobacteriota
Prochlorococcus sp. MIT 0701 [JNBA]
121662
121574
-
Ser
GGA
[ENA]
¡û
Identical group No.29537 (4 seq.)
>WENV170623050
FUWD013134337
[FUWD] metagenome; unknown
1249
1338
+
Ser
GGA
[ENA]
¢þ
>WENV170631284
FUWD013347358
[FUWD] metagenome; unknown
1249
1338
+
Ser
GGA
[ENA]
¢þ
>SRA1017570
SRR035082.162216
454 Sequencing (SRP001803)
377
466
+
Ser
GGA
[SRA]
>SRA1025892
SRR035085.103880
454 Sequencing (SRP001806)
123
209
+
Ser
GGA
[SRA]
Identical group No.29542 (3 seq.)
>WENV170611873
FUWD012426844
[FUWD] metagenome; unknown
65
154
+
Ser
GGA
[ENA]
¢þ
>WENV170698222
LGVF01288964
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
80
169
+
Ser
GGA
[ENA]
¢þ
>SRA1026285
SRR035085.179622
454 Sequencing (SRP001806)
75
164
+
Ser
GGA
[SRA]
Identical group No.56213 (1 seq.)
>SRA1025560
SRR035085.39567
454 Sequencing (SRP001806)
82
167
+
Ser
GGA
[SRA]
Identical group No.56216 (1 seq.)
>SRA1025731
SRR035085.71880
454 Sequencing (SRP001806)
190
277
+
Ser
GGA
[SRA]
Identical group No.56218 (4 seq.)
>WENV170612789
FUWD012688386
[FUWD] metagenome; unknown
346
259
-
Ser
GGA
[ENA]
¢þ
>SRA1017508
SRR035082.151976
454 Sequencing (SRP001803)
324
237
-
Ser
GGA
[SRA]
>SRA1025828
SRR035085.89553
454 Sequencing (SRP001806)
492
405
-
Ser
GGA
[SRA]
>SRA1049266
SRR035095.47722
454 Sequencing (SRP001816)
354
267
-
Ser
GGA
[SRA]
Identical group No.56220 (1 seq.)
>SRA1025943
SRR035085.114532
454 Sequencing (SRP001806)
206
119
-
Ser
GGA
[SRA]
Identical group No.56221 (7 seq.)
>WENV180316988
OBKJ01004265
[OBKJ] metagenome; hydrothermal vent
595
508
-
Ser
GGA
[ENA]
¢þ
>WENV181206338
OFAT01007797
[OFAT] metagenome; hydrothermal vent
418
505
+
Ser
GGA
[ENA]
¢þ
>WENV181207604
OFAZ01005595
[OFAZ] metagenome; hydrothermal vent
590
677
+
Ser
GGA
[ENA]
¢þ
>WENV181208473
OFBB01015398
[OFBB] metagenome; hydrothermal vent
294
207
-
Ser
GGA
[ENA]
¢þ
>WENV181224848
OFDG01010195
[OFDG] metagenome; hydrothermal vent
128
215
+
Ser
GGA
[ENA]
¢þ
>WENV181225516
OFDI01004577
[OFDI] metagenome; hydrothermal vent
577
664
+
Ser
GGA
[ENA]
¢þ
>SRA1025944
SRR035085.114673
454 Sequencing (SRP001806)
158
71
-
Ser
GGA
[SRA]
Identical group No.56233 (6 seq.)
>WENV170607941
FUWD010872998
[FUWD] metagenome; unknown
232
319
+
Ser
GGA
[ENA]
¢þ
>SRA1026513
SRR035085.219145
454 Sequencing (SRP001806)
91
178
+
Ser
GGA
[SRA]
>SRA1030894
SRR035087.343761
454 Sequencing (SRP001808)
224
311
+
Ser
GGA
[SRA]
>SRA1032832
SRR035088.111566
454 Sequencing (SRP001809)
104
17
-
Ser
GGA
[SRA]
>SRA1040704
SRR035091.135122
454 Sequencing (SRP001812)
6
93
+
Ser
GGA
[SRA]
>SRA1040767
SRR035091.145221
454 Sequencing (SRP001812)
145
58
-
Ser
GGA
[SRA]
Identical group No.56238 (2 seq.)
>SRA1026700
SRR035085.263935
454 Sequencing (SRP001806)
40
127
+
Ser
GGA
[SRA]
>SRA1028861
SRR035087.25119
454 Sequencing (SRP001808)
212
125
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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