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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45850 (5 seq.)
>WENV170602325
FUWD010226403
[FUWD] metagenome; unknown
285
198
-
Leu
TAA
[ENA]
¢þ
>WENV170621139
FUWD013050044
[FUWD] metagenome; unknown
1051
964
-
Leu
TAA
[ENA]
¢þ
>WENV170629308
FUWD013266734
[FUWD] metagenome; unknown
1051
964
-
Leu
TAA
[ENA]
¢þ
>SRA1017834
SRR035082.204241
454 Sequencing (SRP001803)
285
198
-
Leu
TAA
[SRA]
>SRA1026160
SRR035085.155844
454 Sequencing (SRP001806)
342
429
+
Leu
TAA
[SRA]
Identical group No.72768 (2 seq.)
>WENV170613250
FUWD012792016
[FUWD] metagenome; unknown
443
530
+
Leu
TAA
[ENA]
¢þ
>SRA1026230
SRR035085.167418
454 Sequencing (SRP001806)
113
26
-
Leu
TAA
[SRA]
Identical group No.87030 (4 seq.)
>WENV170624830
FUWD013187433
[FUWD] metagenome; unknown
6783
6696
-
Leu
TAA
[ENA]
¢þ
>WENV170633098
FUWD013391324
[FUWD] metagenome; unknown
6783
6696
-
Leu
TAA
[ENA]
¢þ
>SRA1025989
SRR035085.121815
454 Sequencing (SRP001806)
357
270
-
Leu
TAA
[SRA]
>SRA1026811
SRR035085.297438
454 Sequencing (SRP001806)
88
175
+
Leu
TAA
[SRA]
Identical group No.87032 (7 seq.)
>WENV183800735
PVBE010612964
[PVBE] marine metagenome; water
186
273
+
Leu
TAA
[ENA]
¢þ
>WENV170605020
FUWD010441545
[FUWD] metagenome; unknown
29
116
+
Leu
TAA
[ENA]
¢þ
>WENV170698840
LGVF01427963
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1656
1743
+
Leu
TAA
[ENA]
¢þ
>SRA1026103
SRR035085.143678
454 Sequencing (SRP001806)
67
154
+
Leu
TAA
[SRA]
>SRA1036559
SRR035089.548123
454 Sequencing (SRP001810)
88
1
-
Leu
TAA
[SRA]
>SRA1049087
SRR035095.17870
454 Sequencing (SRP001816)
168
255
+
Leu
TAA
[SRA]
>SRA1049223
SRR035095.40504
454 Sequencing (SRP001816)
167
254
+
Leu
TAA
[SRA]
Identical group No.87043 (4 seq.)
>WENV170622540
FUWD013108273
[FUWD] metagenome; unknown
1638
1551
-
Leu
TAA
[ENA]
¢þ
>WENV170630435
FUWD013308435
[FUWD] metagenome; unknown
4713
4800
+
Leu
TAA
[ENA]
¢þ
>SRA1026655
SRR035085.251222
454 Sequencing (SRP001806)
430
343
-
Leu
TAA
[SRA]
>SRA1044111
SRR035092.225759
454 Sequencing (SRP001813)
247
334
+
Leu
TAA
[SRA]
Identical group No.112537 (4 seq.)
>WENV170613139
FUWD012782154
[FUWD] metagenome; unknown
597
681
+
Leu
TAA
[ENA]
¢þ
>SRA1026196
SRR035085.161694
454 Sequencing (SRP001806)
246
162
-
Leu
TAA
[SRA]
>SRA1042339
SRR035091.374555
454 Sequencing (SRP001812)
367
451
+
Leu
TAA
[SRA]
>SRA1043763
SRR035092.171700
454 Sequencing (SRP001813)
131
215
+
Leu
TAA
[SRA]
Identical group No.112543 (2 seq.)
>WENV170607856
FUWD010861693
[FUWD] metagenome; unknown
499
415
-
Leu
TAA
[ENA]
¢þ
>SRA1026313
SRR035085.184388
454 Sequencing (SRP001806)
508
424
-
Leu
TAA
[SRA]
Identical group No.112550 (3 seq.)
>WENV170603316
FUWD010300920
[FUWD] metagenome; unknown
441
527
+
Leu
TAA
[ENA]
¢þ
>SRA1026638
SRR035085.246412
454 Sequencing (SRP001806)
347
433
+
Leu
TAA
[SRA]
>SRA1047989
SRR035094.83255
454 Sequencing (SRP001815)
70
153
+
Leu
TAA
[SRA]
Identical group No.153854 (3 seq.)
>WENV170623586
FUWD013159196
[FUWD] metagenome; unknown
1047
962
-
Leu
TAA
[ENA]
¢þ
>WENV170631863
FUWD013368698
[FUWD] metagenome; unknown
1047
962
-
Leu
TAA
[ENA]
¢þ
>SRA1026035
SRR035085.131076
454 Sequencing (SRP001806)
320
235
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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