This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5720 (1 seq.)
>SRA1026406
SRR035085.202125
454 Sequencing (SRP001806)
174
267
+
Ile
TAT
[SRA]
Identical group No.155952 (1 seq.)
>SRA1026665
SRR035085.253875
454 Sequencing (SRP001806)
354
278
-
Ile
TAT
[SRA]
Identical group No.177450 (1 seq.)
>SRA1026517
SRR035085.220058
454 Sequencing (SRP001806)
117
41
-
Ile
TAT
[SRA]
Identical group No.177470 (1 seq.)
>SRA1026632
SRR035085.245768
454 Sequencing (SRP001806)
386
462
+
Ile
TAT
[SRA]
Identical group No.282089 (12 seq.)
>WENV170614571
FUWD012837187
[FUWD] metagenome; unknown
8822
8746
-
Ile
TAT
[ENA]
¢þ
>WENV170614572
FUWD012837187
[FUWD] metagenome; unknown
8640
8564
-
Ile
TAT
[ENA]
¢þ
>WENV170619488
FUWD013015093
[FUWD] metagenome; unknown
598
523
-
Ile
TAT
[ENA]
¢þ
>WENV170627171
FUWD013231759
[FUWD] metagenome; unknown
10899
10827
-
Ile
TAT
[ENA]
¢þ
>SRA1019075
SRR035082.396885
454 Sequencing (SRP001803)
219
295
+
Ile
TAT
[SRA]
>SRA1026288
SRR035085.180370
454 Sequencing (SRP001806)
214
290
+
Ile
TAT
[SRA]
>SRA1030565
SRR035087.296354
454 Sequencing (SRP001808)
151
75
-
Ile
TAT
[SRA]
>SRA1043709
SRR035092.163336
454 Sequencing (SRP001813)
130
54
-
Ile
TAT
[SRA]
>SRA1046010
SRR035093.216125
454 Sequencing (SRP001814)
481
406
-
Ile
TAT
[SRA]
>SRA1046374
SRR035093.291897
454 Sequencing (SRP001814)
335
411
+
Ile
TAT
[SRA]
>SRA1047609
SRR035093.601099
454 Sequencing (SRP001814)
164
240
+
Ile
TAT
[SRA]
>SRA1051418
SRR035096.173446
454 Sequencing (SRP001817)
95
19
-
Ile
TAT
[SRA]
Identical group No.282157 (9 seq.)
>WENV170620733
FUWD013037905
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>WENV170628876
FUWD013255122
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>SRA1026825
SRR035085.304180
454 Sequencing (SRP001806)
116
41
-
Ile
TAT
[SRA]
>SRA1032637
SRR035088.68953
454 Sequencing (SRP001809)
167
242
+
Ile
TAT
[SRA]
>SRA1041059
SRR035091.189447
454 Sequencing (SRP001812)
363
438
+
Ile
TAT
[SRA]
>SRA1042303
SRR035091.369630
454 Sequencing (SRP001812)
160
85
-
Ile
TAT
[SRA]
>SRA1042807
SRR035091.449880
454 Sequencing (SRP001812)
361
436
+
Ile
TAT
[SRA]
>SRA1043900
SRR035092.191899
454 Sequencing (SRP001813)
500
425
-
Ile
TAT
[SRA]
>SRA1050262
SRR035095.224059
454 Sequencing (SRP001816)
138
63
-
Ile
TAT
[SRA]
Identical group No.399676 (3 seq.)
>WENV170623022
FUWD013133383
[FUWD] metagenome; unknown
1092
1018
-
Ile
TAT
[ENA]
¢þ
>WENV170631257
FUWD013346463
[FUWD] metagenome; unknown
1092
1018
-
Ile
TAT
[ENA]
¢þ
>SRA1026000
SRR035085.124486
454 Sequencing (SRP001806)
136
62
-
Ile
TAT
[SRA]
Identical group No.399686 (1 seq.)
>SRA1026125
SRR035085.148452
454 Sequencing (SRP001806)
91
165
+
Ile
TAT
[SRA]
Identical group No.399759 (7 seq.)
>WENV170627295
FUWD013232509
[FUWD] metagenome; unknown
11617
11543
-
Ile
TAT
[ENA]
¢þ
>SRA1026671
SRR035085.254813
454 Sequencing (SRP001806)
313
239
-
Ile
TAT
[SRA]
>SRA1032829
SRR035088.110724
454 Sequencing (SRP001809)
149
223
+
Ile
TAT
[SRA]
>SRA1034947
SRR035089.204904
454 Sequencing (SRP001810)
44
118
+
Ile
TAT
[SRA]
>SRA1040736
SRR035091.140683
454 Sequencing (SRP001812)
188
262
+
Ile
TAT
[SRA]
>SRA1041564
SRR035091.261630
454 Sequencing (SRP001812)
295
221
-
Ile
TAT
[SRA]
>SRA1042611
SRR035091.416248
454 Sequencing (SRP001812)
24
98
+
Ile
TAT
[SRA]
Identical group No.399770 (1 seq.)
>SRA1026778
SRR035085.288054
454 Sequencing (SRP001806)
90
16
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK