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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.593 (12 seq.)
>WENV180098233
MTBK01235062
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
22656
22753
+
SeC
TCA
[ENA]
¢þ
>WENV183514110
OMKS01012035
[OMKS] sediment metagenome; hot spring sediment
2803
2900
+
SeC
TCA
[ENA]
¢þ
>WENV170598384
FUWD010033747
[FUWD] metagenome; unknown
539
442
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170624228
FUWD013178104
[FUWD] metagenome; unknown
2327
2424
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170632510
FUWD013383714
[FUWD] metagenome; unknown
2327
2424
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1025764
SRR035085.79407
454 Sequencing (SRP001806)
128
225
+
SeC
TCA
[SRA]
>SRA1029380
SRR035087.119274
454 Sequencing (SRP001808)
46
143
+
SeC
TCA
[SRA]
>SRA1031222
SRR035087.394880
454 Sequencing (SRP001808)
123
26
-
SeC
TCA
[SRA]
>SRA1034291
SRR035089.50464
454 Sequencing (SRP001810)
202
299
+
SeC
TCA
[SRA]
>SRA1035179
SRR035089.253968
454 Sequencing (SRP001810)
143
46
-
SeC
TCA
[SRA]
>SRA1035659
SRR035089.350986
454 Sequencing (SRP001810)
229
132
-
SeC
TCA
[SRA]
>SRA1036415
SRR035089.515898
454 Sequencing (SRP001810)
149
52
-
SeC
TCA
[SRA]
Identical group No.594 (1 seq.)
>SRA1025885
SRR035085.102195
454 Sequencing (SRP001806)
364
267
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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