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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TCC
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1712 (1 seq.)
>SRA1025650
SRR035085.56827
454 Sequencing (SRP001806)
401
495
+
Gly
TCC
[SRA]
Identical group No.272258 (1 seq.)
>SRA1025531
SRR035085.34507
454 Sequencing (SRP001806)
296
370
+
Gly
TCC
[SRA]
Identical group No.453240 (1 seq.)
>SRA1025605
SRR035085.48433
454 Sequencing (SRP001806)
305
230
-
Gly
TCC
[SRA]
Identical group No.453391 (1 seq.)
>SRA1026382
SRR035085.198331
454 Sequencing (SRP001806)
77
150
+
Gly
TCC
[SRA]
Identical group No.453395 (1 seq.)
>SRA1026434
SRR035085.206387
454 Sequencing (SRP001806)
280
207
-
Gly
TCC
[SRA]
Identical group No.654352 (1 seq.)
>SRA1026363
SRR035085.193567
454 Sequencing (SRP001806)
157
230
+
Gly
TCC
[SRA]
Identical group No.654366 (1 seq.)
>SRA1026437
SRR035085.207083
454 Sequencing (SRP001806)
35
106
+
Gly
TCC
[SRA]
Identical group No.654385 (1 seq.)
>SRA1026575
SRR035085.231825
454 Sequencing (SRP001806)
98
172
+
Gly
TCC
[SRA]
Identical group No.779776 (1 seq.)
>SRA1025518
SRR035085.31616
454 Sequencing (SRP001806)
274
204
-
Gly
TCC
[SRA]
Identical group No.779794 (1 seq.)
>SRA1025710
SRR035085.70004
454 Sequencing (SRP001806)
216
144
-
Gly
TCC
[SRA]
Identical group No.779824 (1 seq.)
>SRA1026212
SRR035085.164050
454 Sequencing (SRP001806)
221
148
-
Gly
TCC
[SRA]
Identical group No.779836 (1 seq.)
>SRA1026464
SRR035085.212022
454 Sequencing (SRP001806)
136
209
+
Gly
TCC
[SRA]
Identical group No.779846 (1 seq.)
>SRA1026607
SRR035085.239220
454 Sequencing (SRP001806)
229
156
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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