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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CCA
HIT:
57 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240864 (8 seq.)
>WENV170625602
FUWD013201442
[FUWD] metagenome; unknown
617
694
+
Trp
CCA
[ENA]
¢þ
>WENV170633826
FUWD013403637
[FUWD] metagenome; unknown
617
694
+
Trp
CCA
[ENA]
¢þ
>SRA1016837
SRR035082.39531
454 Sequencing (SRP001803)
272
349
+
Trp
CCA
[SRA]
>SRA1033006
SRR035088.150494
454 Sequencing (SRP001809)
234
311
+
Trp
CCA
[SRA]
>SRA1034496
SRR035089.110155
454 Sequencing (SRP001810)
104
27
-
Trp
CCA
[SRA]
>SRA1036143
SRR035089.453916
454 Sequencing (SRP001810)
420
343
-
Trp
CCA
[SRA]
>SRA1040107
SRR035091.39802
454 Sequencing (SRP001812)
292
215
-
Trp
CCA
[SRA]
>SRA1042713
SRR035091.434526
454 Sequencing (SRP001812)
347
270
-
Trp
CCA
[SRA]
Identical group No.254152 (2 seq.)
>WENV170612399
FUWD012602655
[FUWD] metagenome; unknown
193
116
-
Trp
CCA
[ENA]
¢þ
>SRA1040157
SRR035091.49841
454 Sequencing (SRP001812)
193
116
-
Trp
CCA
[SRA]
Identical group No.258028 (1 seq.)
>SRA1040949
SRR035091.172731
454 Sequencing (SRP001812)
594
515
-
Trp
CCA
[SRA]
Identical group No.300652 (6 seq.)
>WENV170626767
FUWD013229349
[FUWD] metagenome; unknown
4011
4087
+
Trp
CCA
[ENA]
¢þ
>WENV170632646
FUWD013385546
[FUWD] metagenome; unknown
7843
7919
+
Trp
CCA
[ENA]
¢þ
>SRA1031280
SRR035087.405966
454 Sequencing (SRP001808)
464
388
-
Trp
CCA
[SRA]
>SRA1040445
SRR035091.97952
454 Sequencing (SRP001812)
126
50
-
Trp
CCA
[SRA]
>SRA1042372
SRR035091.378828
454 Sequencing (SRP001812)
424
500
+
Trp
CCA
[SRA]
>SRA1044464
SRR035092.284669
454 Sequencing (SRP001813)
195
271
+
Trp
CCA
[SRA]
Identical group No.358916 (4 seq.)
>WENV170626026
FUWD013212334
[FUWD] metagenome; unknown
606
682
+
Trp
CCA
[ENA]
¢þ
>SRA1033452
SRR035088.260591
454 Sequencing (SRP001809)
141
65
-
Trp
CCA
[SRA]
>SRA1036811
SRR035090.12477
454 Sequencing (SRP001811)
538
460
-
Trp
CCA
[SRA]
>SRA1040310
SRR035091.76209
454 Sequencing (SRP001812)
39
115
+
Trp
CCA
[SRA]
Identical group No.381179 (4 seq.)
>SRA1040264
SRR035091.68493
454 Sequencing (SRP001812)
184
260
+
Trp
CCA
[SRA]
>SRA1040498
SRR035091.106183
454 Sequencing (SRP001812)
183
259
+
Trp
CCA
[SRA]
>SRA1041350
SRR035091.230955
454 Sequencing (SRP001812)
183
259
+
Trp
CCA
[SRA]
>SRA1042381
SRR035091.379816
454 Sequencing (SRP001812)
183
259
+
Trp
CCA
[SRA]
Identical group No.381189 (1 seq.)
>SRA1040326
SRR035091.78844
454 Sequencing (SRP001812)
167
94
-
Trp
CCA
[SRA]
Identical group No.381194 (2 seq.)
>SRA1040366
SRR035091.85226
454 Sequencing (SRP001812)
254
178
-
Trp
CCA
[SRA]
>SRA1041556
SRR035091.260185
454 Sequencing (SRP001812)
254
178
-
Trp
CCA
[SRA]
Identical group No.381282 (1 seq.)
>SRA1041529
SRR035091.256303
454 Sequencing (SRP001812)
385
309
-
Trp
CCA
[SRA]
Identical group No.381314 (1 seq.)
>SRA1041991
SRR035091.323925
454 Sequencing (SRP001812)
239
165
-
Trp
CCA
[SRA]
Identical group No.381327 (1 seq.)
>SRA1042125
SRR035091.342659
454 Sequencing (SRP001812)
449
525
+
Trp
CCA
[SRA]
Identical group No.381368 (1 seq.)
>SRA1042805
SRR035091.449663
454 Sequencing (SRP001812)
433
357
-
Trp
CCA
[SRA]
Identical group No.484034 (12 seq.)
>WENV170620737
FUWD013037917
[FUWD] metagenome; unknown
1998
2071
+
Trp
CCA
[ENA]
¢þ
>WENV170628880
FUWD013255133
[FUWD] metagenome; unknown
1998
2071
+
Trp
CCA
[ENA]
¢þ
>SRA1017879
SRR035082.209527
454 Sequencing (SRP001803)
31
104
+
Trp
CCA
[SRA]
>SRA1028772
SRR035087.219
454 Sequencing (SRP001808)
116
43
-
Trp
CCA
[SRA]
>SRA1030705
SRR035087.317244
454 Sequencing (SRP001808)
76
149
+
Trp
CCA
[SRA]
>SRA1039977
SRR035091.8214
454 Sequencing (SRP001812)
64
137
+
Trp
CCA
[SRA]
>SRA1040478
SRR035091.103559
454 Sequencing (SRP001812)
500
427
-
Trp
CCA
[SRA]
>SRA1042454
SRR035091.388612
454 Sequencing (SRP001812)
333
406
+
Trp
CCA
[SRA]
>SRA1048678
SRR035094.225125
454 Sequencing (SRP001815)
150
77
-
Trp
CCA
[SRA]
>SRA1048769
SRR035094.243717
454 Sequencing (SRP001815)
149
76
-
Trp
CCA
[SRA]
>SRA1048874
SRR035094.269970
454 Sequencing (SRP001815)
144
71
-
Trp
CCA
[SRA]
>SRA1049539
SRR035095.93541
454 Sequencing (SRP001816)
267
340
+
Trp
CCA
[SRA]
Identical group No.548074 (2 seq.)
>WENV170609199
FUWD011318278
[FUWD] metagenome; unknown
50
123
+
Trp
CCA
[ENA]
¢þ
>SRA1040486
SRR035091.104470
454 Sequencing (SRP001812)
220
293
+
Trp
CCA
[SRA]
Identical group No.548342 (3 seq.)
>WENV170612168
FUWD012521126
[FUWD] metagenome; unknown
104
32
-
Trp
CCA
[ENA]
¢þ
>SRA1032896
SRR035088.125425
454 Sequencing (SRP001809)
104
32
-
Trp
CCA
[SRA]
>SRA1042626
SRR035091.418291
454 Sequencing (SRP001812)
30
102
+
Trp
CCA
[SRA]
Identical group No.573512 (2 seq.)
>SRA1040641
SRR035091.126403
454 Sequencing (SRP001812)
216
142
-
Trp
CCA
[SRA]
>SRA1040807
SRR035091.153119
454 Sequencing (SRP001812)
216
142
-
Trp
CCA
[SRA]
Identical group No.573653 (1 seq.)
>SRA1042288
SRR035091.367748
454 Sequencing (SRP001812)
157
85
-
Trp
CCA
[SRA]
Identical group No.573730 (1 seq.)
>SRA1042945
SRR035091.471627
454 Sequencing (SRP001812)
262
189
-
Trp
CCA
[SRA]
Identical group No.681821 (2 seq.)
>WENV183515107
OMKS01046072
[OMKS] sediment metagenome; hot spring sediment
1226
1151
-
Trp
CCA
[ENA]
¢þ
>SRA1041941
SRR035091.317100
454 Sequencing (SRP001812)
184
258
+
Trp
CCA
[SRA]
Identical group No.695221 (4 seq.)
>WENV170570851
FLOH01000029
[FLOH] marine metagenome; water
303361
303287
-
Trp
CCA
[ENA]
¢þ
>WENV170608109
FUWD010894271
[FUWD] metagenome; unknown
572
646
+
Trp
CCA
[ENA]
¢þ
>SRA1040539
SRR035091.112133
454 Sequencing (SRP001812)
152
226
+
Trp
CCA
[SRA]
>SRA1040893
SRR035091.164691
454 Sequencing (SRP001812)
189
263
+
Trp
CCA
[SRA]
Identical group No.711086 (5 seq.)
>WENV170612505
FUWD012625588
[FUWD] metagenome; unknown
202
276
+
Trp
CCA
[ENA]
¢þ
>SRA1040955
SRR035091.173074
454 Sequencing (SRP001812)
201
275
+
Trp
CCA
[SRA]
>SRA1040998
SRR035091.179889
454 Sequencing (SRP001812)
203
277
+
Trp
CCA
[SRA]
>SRA1041643
SRR035091.273070
454 Sequencing (SRP001812)
348
422
+
Trp
CCA
[SRA]
>SRA1041866
SRR035091.306563
454 Sequencing (SRP001812)
349
423
+
Trp
CCA
[SRA]
Identical group No.711089 (3 seq.)
>WENV170612542
FUWD012632062
[FUWD] metagenome; unknown
238
164
-
Trp
CCA
[ENA]
¢þ
>SRA1042523
SRR035091.401643
454 Sequencing (SRP001812)
320
246
-
Trp
CCA
[SRA]
>SRA1044543
SRR035092.296562
454 Sequencing (SRP001813)
165
239
+
Trp
CCA
[SRA]
Identical group No.711126 (2 seq.)
>WENV170612769
FUWD012684611
[FUWD] metagenome; unknown
77
3
-
Trp
CCA
[ENA]
¢þ
>SRA1041270
SRR035091.221865
454 Sequencing (SRP001812)
353
279
-
Trp
CCA
[SRA]
Identical group No.711195 (3 seq.)
>WENV170613367
FUWD012800118
[FUWD] metagenome; unknown
412
486
+
Trp
CCA
[ENA]
¢þ
>SRA1040120
SRR035091.42156
454 Sequencing (SRP001812)
259
185
-
Trp
CCA
[SRA]
>SRA1042556
SRR035091.408525
454 Sequencing (SRP001812)
411
337
-
Trp
CCA
[SRA]
Identical group No.726944 (1 seq.)
>SRA1040014
SRR035091.18045
454 Sequencing (SRP001812)
453
380
-
Trp
CCA
[SRA]
Identical group No.727042 (1 seq.)
>SRA1041022
SRR035091.183488
454 Sequencing (SRP001812)
322
396
+
Trp
CCA
[SRA]
Identical group No.727056 (1 seq.)
>SRA1041274
SRR035091.222099
454 Sequencing (SRP001812)
26
97
+
Trp
CCA
[SRA]
Identical group No.727084 (1 seq.)
>SRA1041678
SRR035091.277573
454 Sequencing (SRP001812)
221
149
-
Trp
CCA
[SRA]
Identical group No.727093 (1 seq.)
>SRA1041764
SRR035091.289992
454 Sequencing (SRP001812)
366
292
-
Trp
CCA
[SRA]
Identical group No.727201 (3 seq.)
>SRA1023044
SRR035083.511702
454 Sequencing (SRP001804)
418
493
+
Trp
CCA
[SRA]
>SRA1038393
SRR035090.296626
454 Sequencing (SRP001811)
426
501
+
Trp
CCA
[SRA]
>SRA1041894
SRR035091.311571
454 Sequencing (SRP001812)
341
416
+
Trp
CCA
[SRA]
Identical group No.779964 (6 seq.)
>WENV170624224
FUWD013178070
[FUWD] metagenome; unknown
13072
13002
-
Trp
CCA
[ENA]
¢þ
>WENV170632506
FUWD013383687
[FUWD] metagenome; unknown
13072
13002
-
Trp
CCA
[ENA]
¢þ
>SRA1031396
SRR035087.423419
454 Sequencing (SRP001808)
11
81
+
Trp
CCA
[SRA]
>SRA1033402
SRR035088.246061
454 Sequencing (SRP001809)
148
218
+
Trp
CCA
[SRA]
>SRA1036372
SRR035089.504174
454 Sequencing (SRP001810)
149
79
-
Trp
CCA
[SRA]
>SRA1041750
SRR035091.287715
454 Sequencing (SRP001812)
11
81
+
Trp
CCA
[SRA]
Identical group No.794112 (5 seq.)
>WENV170603310
FUWD010300059
[FUWD] metagenome; unknown
706
633
-
Trp
CCA
[ENA]
¢þ
>SRA1022898
SRR035083.481458
454 Sequencing (SRP001804)
140
67
-
Trp
CCA
[SRA]
>SRA1039990
SRR035091.10950
454 Sequencing (SRP001812)
111
38
-
Trp
CCA
[SRA]
>SRA1054721
SRR035099.195408
454 Sequencing (SRP001820)
44
117
+
Trp
CCA
[SRA]
>SRA1054814
SRR035099.220564
454 Sequencing (SRP001820)
44
117
+
Trp
CCA
[SRA]
Identical group No.804983 (4 seq.)
>WENV170603257
FUWD010297372
[FUWD] metagenome; unknown
775
846
+
Trp
CCA
[ENA]
¢þ
>SRA1016695
SRR035082.4519
454 Sequencing (SRP001803)
189
260
+
Trp
CCA
[SRA]
>SRA1040388
SRR035091.88315
454 Sequencing (SRP001812)
284
213
-
Trp
CCA
[SRA]
>SRA1048048
SRR035094.98165
454 Sequencing (SRP001815)
148
77
-
Trp
CCA
[SRA]
Identical group No.805033 (3 seq.)
>WENV170605137
FUWD010453442
[FUWD] metagenome; unknown
76
3
-
Trp
CCA
[ENA]
¢þ
>SRA1017007
SRR035082.67926
454 Sequencing (SRP001803)
184
111
-
Trp
CCA
[SRA]
>SRA1041048
SRR035091.187509
454 Sequencing (SRP001812)
81
8
-
Trp
CCA
[SRA]
Identical group No.805035 (9 seq.)
>WENV170605184
FUWD010457079
[FUWD] metagenome; unknown
200
127
-
Trp
CCA
[ENA]
¢þ
>WENV170618436
FUWD012968198
[FUWD] metagenome; unknown
455
382
-
Trp
CCA
[ENA]
¢þ
>SRA1040356
SRR035091.84542
454 Sequencing (SRP001812)
136
209
+
Trp
CCA
[SRA]
>SRA1040814
SRR035091.153442
454 Sequencing (SRP001812)
275
348
+
Trp
CCA
[SRA]
>SRA1041918
SRR035091.315427
454 Sequencing (SRP001812)
93
20
-
Trp
CCA
[SRA]
>SRA1042576
SRR035091.410953
454 Sequencing (SRP001812)
23
96
+
Trp
CCA
[SRA]
>SRA1042830
SRR035091.451824
454 Sequencing (SRP001812)
79
152
+
Trp
CCA
[SRA]
>SRA1050414
SRR035095.257594
454 Sequencing (SRP001816)
210
137
-
Trp
CCA
[SRA]
>SRA1050580
SRR035095.296409
454 Sequencing (SRP001816)
211
138
-
Trp
CCA
[SRA]
Identical group No.805276 (2 seq.)
>WENV170612493
FUWD012622891
[FUWD] metagenome; unknown
381
311
-
Trp
CCA
[ENA]
¢þ
>SRA1041639
SRR035091.272533
454 Sequencing (SRP001812)
381
311
-
Trp
CCA
[SRA]
Identical group No.805332 (2 seq.)
>WENV170613293
FUWD012794032
[FUWD] metagenome; unknown
722
651
-
Trp
CCA
[ENA]
¢þ
>SRA1040397
SRR035091.90381
454 Sequencing (SRP001812)
203
274
+
Trp
CCA
[SRA]
Identical group No.805383 (8 seq.)
>WENV170620236
FUWD013028001
[FUWD] metagenome; unknown
10393
10320
-
Trp
CCA
[ENA]
¢þ
>WENV170620738
FUWD013037931
[FUWD] metagenome; unknown
4878
4951
+
Trp
CCA
[ENA]
¢þ
>WENV170628255
FUWD013244073
[FUWD] metagenome; unknown
23911
23838
-
Trp
CCA
[ENA]
¢þ
>WENV170628476
FUWD013247384
[FUWD] metagenome; unknown
14195
14268
+
Trp
CCA
[ENA]
¢þ
>SRA1017306
SRR035082.116047
454 Sequencing (SRP001803)
22
95
+
Trp
CCA
[SRA]
>SRA1019133
SRR035082.407752
454 Sequencing (SRP001803)
322
249
-
Trp
CCA
[SRA]
>SRA1041569
SRR035091.261777
454 Sequencing (SRP001812)
152
79
-
Trp
CCA
[SRA]
>SRA1044235
SRR035092.246419
454 Sequencing (SRP001813)
317
246
-
Trp
CCA
[SRA]
Identical group No.805500 (4 seq.)
>WENV170623717
FUWD013169678
[FUWD] metagenome; unknown
580
507
-
Trp
CCA
[ENA]
¢þ
>WENV170631739
FUWD013363628
[FUWD] metagenome; unknown
3175
3248
+
Trp
CCA
[ENA]
¢þ
>SRA1017437
SRR035082.139061
454 Sequencing (SRP001803)
52
125
+
Trp
CCA
[SRA]
>SRA1040733
SRR035091.139170
454 Sequencing (SRP001812)
113
40
-
Trp
CCA
[SRA]
Identical group No.812682 (1 seq.)
>SRA1040091
SRR035091.37331
454 Sequencing (SRP001812)
242
171
-
Trp
CCA
[SRA]
Identical group No.812683 (1 seq.)
>SRA1040104
SRR035091.39328
454 Sequencing (SRP001812)
10
82
+
Trp
CCA
[SRA]
Identical group No.812687 (1 seq.)
>SRA1040222
SRR035091.61916
454 Sequencing (SRP001812)
39
111
+
Trp
CCA
[SRA]
Identical group No.812689 (1 seq.)
>SRA1040254
SRR035091.66477
454 Sequencing (SRP001812)
51
123
+
Trp
CCA
[SRA]
Identical group No.812694 (1 seq.)
>SRA1040347
SRR035091.82348
454 Sequencing (SRP001812)
473
400
-
Trp
CCA
[SRA]
Identical group No.812697 (1 seq.)
>SRA1040458
SRR035091.100792
454 Sequencing (SRP001812)
40
113
+
Trp
CCA
[SRA]
Identical group No.812699 (1 seq.)
>SRA1040469
SRR035091.102324
454 Sequencing (SRP001812)
90
163
+
Trp
CCA
[SRA]
Identical group No.812700 (1 seq.)
>SRA1040488
SRR035091.104869
454 Sequencing (SRP001812)
281
354
+
Trp
CCA
[SRA]
Identical group No.812724 (2 seq.)
>SRA1041074
SRR035091.192311
454 Sequencing (SRP001812)
55
128
+
Trp
CCA
[SRA]
>SRA1041950
SRR035091.317797
454 Sequencing (SRP001812)
55
128
+
Trp
CCA
[SRA]
Identical group No.812726 (1 seq.)
>SRA1041102
SRR035091.196908
454 Sequencing (SRP001812)
289
218
-
Trp
CCA
[SRA]
Identical group No.812741 (1 seq.)
>SRA1041419
SRR035091.239630
454 Sequencing (SRP001812)
169
240
+
Trp
CCA
[SRA]
Identical group No.812749 (1 seq.)
>SRA1041618
SRR035091.270226
454 Sequencing (SRP001812)
24
97
+
Trp
CCA
[SRA]
Identical group No.812770 (1 seq.)
>SRA1042040
SRR035091.331541
454 Sequencing (SRP001812)
100
171
+
Trp
CCA
[SRA]
Identical group No.812772 (1 seq.)
>SRA1042127
SRR035091.342857
454 Sequencing (SRP001812)
115
42
-
Trp
CCA
[SRA]
Identical group No.812776 (1 seq.)
>SRA1042221
SRR035091.358160
454 Sequencing (SRP001812)
73
143
+
Trp
CCA
[SRA]
Identical group No.812785 (2 seq.)
>SRA1042333
SRR035091.373678
454 Sequencing (SRP001812)
75
2
-
Trp
CCA
[SRA]
>SRA1048762
SRR035094.243144
454 Sequencing (SRP001815)
92
19
-
Trp
CCA
[SRA]
Identical group No.812806 (1 seq.)
>SRA1042815
SRR035091.450375
454 Sequencing (SRP001812)
135
209
+
Trp
CCA
[SRA]
Identical group No.812809 (1 seq.)
>SRA1042897
SRR035091.462964
454 Sequencing (SRP001812)
288
359
+
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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