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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CGA
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4004 (7 seq.)
>WENV170622842
FUWD013123298
[FUWD] metagenome; unknown
339
433
+
Ser
CGA
[ENA]
¢þ
>WENV170631060
FUWD013336852
[FUWD] metagenome; unknown
339
433
+
Ser
CGA
[ENA]
¢þ
>SRA1029627
SRR035087.153415
454 Sequencing (SRP001808)
339
433
+
Ser
CGA
[SRA]
>SRA1036472
SRR035089.530312
454 Sequencing (SRP001810)
160
254
+
Ser
CGA
[SRA]
>SRA1040659
SRR035091.128896
454 Sequencing (SRP001812)
187
93
-
Ser
CGA
[SRA]
>SRA1041692
SRR035091.279502
454 Sequencing (SRP001812)
187
93
-
Ser
CGA
[SRA]
>SRA1043914
SRR035092.193060
454 Sequencing (SRP001813)
226
320
+
Ser
CGA
[SRA]
Identical group No.16596 (4 seq.)
>WENV170603278
FUWD010298307
[FUWD] metagenome; unknown
670
579
-
Ser
CGA
[ENA]
¢þ
>SRA1017890
SRR035082.210885
454 Sequencing (SRP001803)
403
312
-
Ser
CGA
[SRA]
>SRA1042574
SRR035091.410760
454 Sequencing (SRP001812)
242
333
+
Ser
CGA
[SRA]
>SRA1049786
SRR035095.138360
454 Sequencing (SRP001816)
22
113
+
Ser
CGA
[SRA]
Identical group No.16599 (2 seq.)
>WENV170603390
FUWD010307339
[FUWD] metagenome; unknown
514
423
-
Ser
CGA
[ENA]
¢þ
>SRA1042932
SRR035091.469682
454 Sequencing (SRP001812)
193
102
-
Ser
CGA
[SRA]
Identical group No.16633 (4 seq.)
>WENV170623471
FUWD013152668
[FUWD] metagenome; unknown
958
867
-
Ser
CGA
[ENA]
¢þ
>WENV170631736
FUWD013363568
[FUWD] metagenome; unknown
958
867
-
Ser
CGA
[ENA]
¢þ
>SRA1039788
SRR035090.569474
454 Sequencing (SRP001811)
51
142
+
Ser
CGA
[SRA]
>SRA1042121
SRR035091.341854
454 Sequencing (SRP001812)
148
239
+
Ser
CGA
[SRA]
Identical group No.23047 (5 seq.)
>WENV170607982
FUWD010878036
[FUWD] metagenome; unknown
279
369
+
Ser
CGA
[ENA]
¢þ
>SRA1032810
SRR035088.107625
454 Sequencing (SRP001809)
280
370
+
Ser
CGA
[SRA]
>SRA1033704
SRR035088.329930
454 Sequencing (SRP001809)
280
370
+
Ser
CGA
[SRA]
>SRA1040161
SRR035091.50335
454 Sequencing (SRP001812)
276
186
-
Ser
CGA
[SRA]
>SRA1054596
SRR035099.170194
454 Sequencing (SRP001820)
102
12
-
Ser
CGA
[SRA]
Identical group No.29554 (82 seq.)
>W1711167294
LVWG01000011
Chlorobiota
Pelodictyon luteolum [LVWG]
7707
7618
-
Ser
CGA
[ENA]
¡û
>C005294
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
1161857
1161943
+
Ser
CGA
[Ensembl]
¡û
>C016772
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
623821
623735
-
Ser
CGA
[Ensembl]
¡û
>C018277
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
671308
671222
-
Ser
CGA
[Ensembl]
¡û
>WENV170613648
FUWD012815672
[FUWD] metagenome; unknown
954
867
-
Ser
CGA
[ENA]
¢þ
>WENV170614861
FUWD012843185
[FUWD] metagenome; unknown
231
142
-
Ser
CGA
[ENA]
¢þ
>WENV170615070
FUWD012848101
[FUWD] metagenome; unknown
63
150
+
Ser
CGA
[ENA]
¢þ
>WENV170615270
FUWD012853062
[FUWD] metagenome; unknown
603
514
-
Ser
CGA
[ENA]
¢þ
>WENV170615271
FUWD012853063
[FUWD] metagenome; unknown
421
332
-
Ser
CGA
[ENA]
¢þ
>W09103339
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
290114
290027
-
Ser
CGA
[ENA]
¡û
>SRA1018617
SRR035082.323272
454 Sequencing (SRP001803)
186
99
-
Ser
CGA
[SRA]
>SRA1020168
SRR035083.65597
454 Sequencing (SRP001804)
187
100
-
Ser
CGA
[SRA]
>SRA1020211
SRR035083.74874
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1020328
SRR035083.97491
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020355
SRR035083.101244
454 Sequencing (SRP001804)
383
470
+
Ser
CGA
[SRA]
>SRA1020453
SRR035083.117886
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020631
SRR035083.143169
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1020850
SRR035083.172977
454 Sequencing (SRP001804)
247
160
-
Ser
CGA
[SRA]
>SRA1020910
SRR035083.183777
454 Sequencing (SRP001804)
175
88
-
Ser
CGA
[SRA]
>SRA1021268
SRR035083.233721
454 Sequencing (SRP001804)
142
55
-
Ser
CGA
[SRA]
>SRA1021296
SRR035083.238462
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021486
SRR035083.264975
454 Sequencing (SRP001804)
76
163
+
Ser
CGA
[SRA]
>SRA1021528
SRR035083.269768
454 Sequencing (SRP001804)
227
140
-
Ser
CGA
[SRA]
>SRA1021573
SRR035083.274911
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1021674
SRR035083.291168
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021725
SRR035083.297770
454 Sequencing (SRP001804)
137
224
+
Ser
CGA
[SRA]
>SRA1021782
SRR035083.307980
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1021838
SRR035083.315367
454 Sequencing (SRP001804)
182
269
+
Ser
CGA
[SRA]
>SRA1021845
SRR035083.316909
454 Sequencing (SRP001804)
260
173
-
Ser
CGA
[SRA]
>SRA1021895
SRR035083.326032
454 Sequencing (SRP001804)
255
168
-
Ser
CGA
[SRA]
>SRA1021965
SRR035083.332538
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022018
SRR035083.339812
454 Sequencing (SRP001804)
289
376
+
Ser
CGA
[SRA]
>SRA1022096
SRR035083.353177
454 Sequencing (SRP001804)
188
101
-
Ser
CGA
[SRA]
>SRA1022128
SRR035083.356460
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022192
SRR035083.366402
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1022313
SRR035083.387122
454 Sequencing (SRP001804)
231
318
+
Ser
CGA
[SRA]
>SRA1022319
SRR035083.388543
454 Sequencing (SRP001804)
164
77
-
Ser
CGA
[SRA]
>SRA1022409
SRR035083.401887
454 Sequencing (SRP001804)
115
28
-
Ser
CGA
[SRA]
>SRA1022465
SRR035083.409044
454 Sequencing (SRP001804)
177
264
+
Ser
CGA
[SRA]
>SRA1022472
SRR035083.410561
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022633
SRR035083.435416
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1022755
SRR035083.454326
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1023001
SRR035083.503100
454 Sequencing (SRP001804)
17
104
+
Ser
CGA
[SRA]
>SRA1032010
SRR035087.530095
454 Sequencing (SRP001808)
174
261
+
Ser
CGA
[SRA]
>SRA1032712
SRR035088.85422
454 Sequencing (SRP001809)
71
158
+
Ser
CGA
[SRA]
>SRA1033197
SRR035088.194694
454 Sequencing (SRP001809)
133
46
-
Ser
CGA
[SRA]
>SRA1033810
SRR035088.361644
454 Sequencing (SRP001809)
208
121
-
Ser
CGA
[SRA]
>SRA1034800
SRR035089.175675
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035155
SRR035089.248820
454 Sequencing (SRP001810)
158
71
-
Ser
CGA
[SRA]
>SRA1035653
SRR035089.349665
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035833
SRR035089.384809
454 Sequencing (SRP001810)
247
160
-
Ser
CGA
[SRA]
>SRA1036925
SRR035090.39658
454 Sequencing (SRP001811)
143
56
-
Ser
CGA
[SRA]
>SRA1036980
SRR035090.51463
454 Sequencing (SRP001811)
127
40
-
Ser
CGA
[SRA]
>SRA1037194
SRR035090.91293
454 Sequencing (SRP001811)
270
183
-
Ser
CGA
[SRA]
>SRA1037683
SRR035090.173884
454 Sequencing (SRP001811)
97
10
-
Ser
CGA
[SRA]
>SRA1037756
SRR035090.189246
454 Sequencing (SRP001811)
212
125
-
Ser
CGA
[SRA]
>SRA1038174
SRR035090.258309
454 Sequencing (SRP001811)
279
366
+
Ser
CGA
[SRA]
>SRA1038211
SRR035090.265595
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038215
SRR035090.266359
454 Sequencing (SRP001811)
221
308
+
Ser
CGA
[SRA]
>SRA1038358
SRR035090.291392
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038429
SRR035090.302940
454 Sequencing (SRP001811)
197
110
-
Ser
CGA
[SRA]
>SRA1038468
SRR035090.311214
454 Sequencing (SRP001811)
171
84
-
Ser
CGA
[SRA]
>SRA1038622
SRR035090.338693
454 Sequencing (SRP001811)
183
96
-
Ser
CGA
[SRA]
>SRA1038750
SRR035090.359715
454 Sequencing (SRP001811)
269
182
-
Ser
CGA
[SRA]
>SRA1039088
SRR035090.422553
454 Sequencing (SRP001811)
144
231
+
Ser
CGA
[SRA]
>SRA1039140
SRR035090.431249
454 Sequencing (SRP001811)
118
205
+
Ser
CGA
[SRA]
>SRA1039219
SRR035090.446466
454 Sequencing (SRP001811)
132
45
-
Ser
CGA
[SRA]
>SRA1039271
SRR035090.455240
454 Sequencing (SRP001811)
279
192
-
Ser
CGA
[SRA]
>SRA1039288
SRR035090.459082
454 Sequencing (SRP001811)
190
103
-
Ser
CGA
[SRA]
>SRA1039571
SRR035090.518294
454 Sequencing (SRP001811)
249
162
-
Ser
CGA
[SRA]
>SRA1039704
SRR035090.549321
454 Sequencing (SRP001811)
169
256
+
Ser
CGA
[SRA]
>SRA1042854
SRR035091.456188
454 Sequencing (SRP001812)
201
114
-
Ser
CGA
[SRA]
>SRA1046763
SRR035093.378306
454 Sequencing (SRP001814)
71
158
+
Ser
CGA
[SRA]
>SRA1051704
SRR035098.61345
454 Sequencing (SRP001819)
280
193
-
Ser
CGA
[SRA]
>SRA1052244
SRR035098.166566
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1053096
SRR035098.335301
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1054041
SRR035099.40553
454 Sequencing (SRP001820)
87
174
+
Ser
CGA
[SRA]
>SRA1054055
SRR035099.44197
454 Sequencing (SRP001820)
242
155
-
Ser
CGA
[SRA]
>SRA1054585
SRR035099.168074
454 Sequencing (SRP001820)
28
115
+
Ser
CGA
[SRA]
>SRA1054679
SRR035099.186690
454 Sequencing (SRP001820)
417
504
+
Ser
CGA
[SRA]
>SRA1054826
SRR035099.224055
454 Sequencing (SRP001820)
310
397
+
Ser
CGA
[SRA]
>W1610977625
LVWG01000011
Chlorobiota
Pelodictyon luteolum [LVWG]
7707
7618
-
Ser
CGA
[ENA]
¡û
Identical group No.37622 (3 seq.)
>WENV170612188
FUWD012527533
[FUWD] metagenome; unknown
17
106
+
Ser
CGA
[ENA]
¢þ
>SRA1033267
SRR035088.210276
454 Sequencing (SRP001809)
17
106
+
Ser
CGA
[SRA]
>SRA1040359
SRR035091.84865
454 Sequencing (SRP001812)
152
64
-
Ser
CGA
[SRA]
Identical group No.37625 (2 seq.)
>WENV170612465
FUWD012617355
[FUWD] metagenome; unknown
144
55
-
Ser
CGA
[ENA]
¢þ
>SRA1041170
SRR035091.207825
454 Sequencing (SRP001812)
144
55
-
Ser
CGA
[SRA]
Identical group No.37627 (2 seq.)
>WENV170612519
FUWD012627554
[FUWD] metagenome; unknown
303
392
+
Ser
CGA
[ENA]
¢þ
>SRA1042049
SRR035091.332560
454 Sequencing (SRP001812)
303
392
+
Ser
CGA
[SRA]
Identical group No.39705 (1 seq.)
>SRA1040425
SRR035091.95836
454 Sequencing (SRP001812)
271
359
+
Ser
CGA
[SRA]
Identical group No.39708 (1 seq.)
>SRA1040874
SRR035091.162258
454 Sequencing (SRP001812)
166
77
-
Ser
CGA
[SRA]
Identical group No.39711 (1 seq.)
>SRA1041183
SRR035091.209782
454 Sequencing (SRP001812)
353
264
-
Ser
CGA
[SRA]
Identical group No.39714 (1 seq.)
>SRA1041339
SRR035091.229674
454 Sequencing (SRP001812)
116
205
+
Ser
CGA
[SRA]
Identical group No.52453 (1 seq.)
>SRA1040635
SRR035091.124720
454 Sequencing (SRP001812)
64
150
+
Ser
CGA
[SRA]
Identical group No.56260 (14 seq.)
>WENV170598485
FUWD010036982
[FUWD] metagenome; unknown
900
813
-
Ser
CGA
[ENA]
¢þ
>WENV170627300
FUWD013232509
[FUWD] metagenome; unknown
5509
5422
-
Ser
CGA
[ENA]
¢þ
>SRA1030661
SRR035087.310930
454 Sequencing (SRP001808)
111
24
-
Ser
CGA
[SRA]
>SRA1034025
SRR035088.451778
454 Sequencing (SRP001809)
310
223
-
Ser
CGA
[SRA]
>SRA1035115
SRR035089.240303
454 Sequencing (SRP001810)
127
40
-
Ser
CGA
[SRA]
>SRA1036295
SRR035089.489354
454 Sequencing (SRP001810)
222
135
-
Ser
CGA
[SRA]
>SRA1040451
SRR035091.99602
454 Sequencing (SRP001812)
94
7
-
Ser
CGA
[SRA]
>SRA1041823
SRR035091.299683
454 Sequencing (SRP001812)
157
70
-
Ser
CGA
[SRA]
>SRA1042749
SRR035091.440409
454 Sequencing (SRP001812)
456
369
-
Ser
CGA
[SRA]
>SRA1043587
SRR035092.142745
454 Sequencing (SRP001813)
152
239
+
Ser
CGA
[SRA]
>SRA1043715
SRR035092.164413
454 Sequencing (SRP001813)
467
380
-
Ser
CGA
[SRA]
>SRA1044616
SRR035092.310173
454 Sequencing (SRP001813)
361
274
-
Ser
CGA
[SRA]
>SRA1049710
SRR035095.123259
454 Sequencing (SRP001816)
526
439
-
Ser
CGA
[SRA]
>SRA1048217
SRR035094.130016
454 Sequencing (SRP001815)
276
189
-
Ser
CGA
[SRA]
Identical group No.64290 (3 seq.)
>WENV170611648
FUWD012365972
[FUWD] metagenome; unknown
221
133
-
Ser
CGA
[ENA]
¢þ
>SRA1018956
SRR035082.376098
454 Sequencing (SRP001803)
269
181
-
Ser
CGA
[SRA]
>SRA1042799
SRR035091.449074
454 Sequencing (SRP001812)
221
133
-
Ser
CGA
[SRA]
Identical group No.64292 (3 seq.)
>WENV170611700
FUWD012377623
[FUWD] metagenome; unknown
335
250
-
Ser
CGA
[ENA]
¢þ
>SRA1019734
SRR035082.514003
454 Sequencing (SRP001803)
372
287
-
Ser
CGA
[SRA]
>SRA1041762
SRR035091.289735
454 Sequencing (SRP001812)
335
250
-
Ser
CGA
[SRA]
Identical group No.66498 (1 seq.)
>SRA1042342
SRR035091.374670
454 Sequencing (SRP001812)
354
269
-
Ser
CGA
[SRA]
Identical group No.86405 (4 seq.)
>WENV170625546
FUWD013200122
[FUWD] metagenome; unknown
2287
2373
+
Ser
CGA
[ENA]
¢þ
>WENV170633773
FUWD013402440
[FUWD] metagenome; unknown
2287
2373
+
Ser
CGA
[ENA]
¢þ
>SRA1040144
SRR035091.47837
454 Sequencing (SRP001812)
153
239
+
Ser
CGA
[SRA]
>SRA1043252
SRR035092.82589
454 Sequencing (SRP001813)
136
50
-
Ser
CGA
[SRA]
Identical group No.89581 (1 seq.)
>SRA1040404
SRR035091.92075
454 Sequencing (SRP001812)
244
158
-
Ser
CGA
[SRA]
Identical group No.89610 (1 seq.)
>SRA1042077
SRR035091.335078
454 Sequencing (SRP001812)
276
362
+
Ser
CGA
[SRA]
Identical group No.89622 (1 seq.)
>SRA1041292
SRR035091.224203
454 Sequencing (SRP001812)
180
96
-
Ser
CGA
[SRA]
Identical group No.100001 (5 seq.)
>WENV170612628
FUWD012647709
[FUWD] metagenome; unknown
210
125
-
Ser
CGA
[ENA]
¢þ
>SRA1025875
SRR035085.100213
454 Sequencing (SRP001806)
318
233
-
Ser
CGA
[SRA]
>SRA1042615
SRR035091.416982
454 Sequencing (SRP001812)
118
33
-
Ser
CGA
[SRA]
>SRA1043857
SRR035092.186801
454 Sequencing (SRP001813)
210
125
-
Ser
CGA
[SRA]
>SRA1048955
SRR035094.296413
454 Sequencing (SRP001815)
114
199
+
Ser
CGA
[SRA]
Identical group No.100031 (7 seq.)
>WENV170612121
FUWD012507154
[FUWD] metagenome; unknown
91
176
+
Ser
CGA
[ENA]
¢þ
>WENV170612261
FUWD012556861
[FUWD] metagenome; unknown
163
248
+
Ser
CGA
[ENA]
¢þ
>SRA1032020
SRR035087.533898
454 Sequencing (SRP001808)
97
182
+
Ser
CGA
[SRA]
>SRA1034751
SRR035089.166571
454 Sequencing (SRP001810)
163
248
+
Ser
CGA
[SRA]
>SRA1042214
SRR035091.356724
454 Sequencing (SRP001812)
276
191
-
Ser
CGA
[SRA]
>SRA1049267
SRR035095.47760
454 Sequencing (SRP001816)
338
253
-
Ser
CGA
[SRA]
>SRA1049325
SRR035095.57068
454 Sequencing (SRP001816)
337
252
-
Ser
CGA
[SRA]
Identical group No.108509 (5 seq.)
>WENV170621241
FUWD013053543
[FUWD] metagenome; unknown
355
438
+
Ser
CGA
[ENA]
¢þ
>WENV170629421
FUWD013270042
[FUWD] metagenome; unknown
355
438
+
Ser
CGA
[ENA]
¢þ
>SRA1033147
SRR035088.183200
454 Sequencing (SRP001809)
291
373
+
Ser
CGA
[SRA]
>SRA1040471
SRR035091.102572
454 Sequencing (SRP001812)
90
7
-
Ser
CGA
[SRA]
>SRA1041466
SRR035091.245497
454 Sequencing (SRP001812)
124
41
-
Ser
CGA
[SRA]
Identical group No.144113 (2 seq.)
>WENV170608013
FUWD010883064
[FUWD] metagenome; unknown
150
230
+
Ser
CGA
[ENA]
¢þ
>SRA1041300
SRR035091.225119
454 Sequencing (SRP001812)
365
285
-
Ser
CGA
[SRA]
Identical group No.144114 (6 seq.)
>WENV170608170
FUWD010898580
[FUWD] metagenome; unknown
100
184
+
Ser
CGA
[ENA]
¢þ
>SRA1032984
SRR035088.144017
454 Sequencing (SRP001809)
234
150
-
Ser
CGA
[SRA]
>SRA1041302
SRR035091.225498
454 Sequencing (SRP001812)
53
137
+
Ser
CGA
[SRA]
>SRA1043574
SRR035092.140937
454 Sequencing (SRP001813)
122
206
+
Ser
CGA
[SRA]
>SRA1049194
SRR035095.35758
454 Sequencing (SRP001816)
98
182
+
Ser
CGA
[SRA]
>SRA1049697
SRR035095.121279
454 Sequencing (SRP001816)
76
160
+
Ser
CGA
[SRA]
Identical group No.145019 (1 seq.)
>SRA1040850
SRR035091.159363
454 Sequencing (SRP001812)
288
207
-
Ser
CGA
[SRA]
Identical group No.145029 (1 seq.)
>SRA1042095
SRR035091.337422
454 Sequencing (SRP001812)
184
266
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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