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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GGA
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25976 (1 seq.)
>SRA1040639
SRR035091.126114
454 Sequencing (SRP001812)
206
115
-
Ser
GGA
[SRA]
Identical group No.25978 (1 seq.)
>SRA1041233
SRR035091.217729
454 Sequencing (SRP001812)
92
1
-
Ser
GGA
[SRA]
Identical group No.57975 (4 seq.)
>WENV170611715
FUWD012381996
[FUWD] metagenome; unknown
227
316
+
Ser
GGA
[ENA]
¢þ
>SRA1020247
SRR035083.82413
454 Sequencing (SRP001804)
429
518
+
Ser
GGA
[SRA]
>SRA1020813
SRR035083.167648
454 Sequencing (SRP001804)
429
518
+
Ser
GGA
[SRA]
>SRA1042102
SRR035091.338232
454 Sequencing (SRP001812)
199
110
-
Ser
GGA
[SRA]
Identical group No.58039 (4 seq.)
>WENV170620843
FUWD013041031
[FUWD] metagenome; unknown
1589
1676
+
Ser
GGA
[ENA]
¢þ
>WENV170628998
FUWD013258121
[FUWD] metagenome; unknown
2261
2174
-
Ser
GGA
[ENA]
¢þ
>SRA1041043
SRR035091.186692
454 Sequencing (SRP001812)
159
246
+
Ser
GGA
[SRA]
>SRA1042442
SRR035091.387066
454 Sequencing (SRP001812)
120
33
-
Ser
GGA
[SRA]
Identical group No.61389 (1 seq.)
>SRA1039991
SRR035091.11305
454 Sequencing (SRP001812)
255
344
+
Ser
GGA
[SRA]
Identical group No.61402 (1 seq.)
>SRA1041296
SRR035091.224646
454 Sequencing (SRP001812)
321
409
+
Ser
GGA
[SRA]
Identical group No.61407 (2 seq.)
>SRA1033662
SRR035088.317387
454 Sequencing (SRP001809)
128
39
-
Ser
GGA
[SRA]
>SRA1041625
SRR035091.270499
454 Sequencing (SRP001812)
158
69
-
Ser
GGA
[SRA]
Identical group No.61411 (1 seq.)
>SRA1041953
SRR035091.318007
454 Sequencing (SRP001812)
287
375
+
Ser
GGA
[SRA]
Identical group No.61418 (1 seq.)
>SRA1042617
SRR035091.417152
454 Sequencing (SRP001812)
170
259
+
Ser
GGA
[SRA]
Identical group No.61420 (1 seq.)
>SRA1042631
SRR035091.419472
454 Sequencing (SRP001812)
101
190
+
Ser
GGA
[SRA]
Identical group No.61426 (1 seq.)
>SRA1042758
SRR035091.442133
454 Sequencing (SRP001812)
217
306
+
Ser
GGA
[SRA]
Identical group No.81152 (1 seq.)
>SRA1040792
SRR035091.150712
454 Sequencing (SRP001812)
24
112
+
Ser
GGA
[SRA]
Identical group No.81155 (1 seq.)
>SRA1041175
SRR035091.209062
454 Sequencing (SRP001812)
351
439
+
Ser
GGA
[SRA]
Identical group No.87041 (6 seq.)
>WENV170607941
FUWD010872998
[FUWD] metagenome; unknown
232
319
+
Ser
GGA
[ENA]
¢þ
>SRA1026513
SRR035085.219145
454 Sequencing (SRP001806)
91
178
+
Ser
GGA
[SRA]
>SRA1030894
SRR035087.343761
454 Sequencing (SRP001808)
224
311
+
Ser
GGA
[SRA]
>SRA1032832
SRR035088.111566
454 Sequencing (SRP001809)
104
17
-
Ser
GGA
[SRA]
>SRA1040704
SRR035091.135122
454 Sequencing (SRP001812)
6
93
+
Ser
GGA
[SRA]
>SRA1040767
SRR035091.145221
454 Sequencing (SRP001812)
145
58
-
Ser
GGA
[SRA]
Identical group No.87067 (5 seq.)
>WENV170626540
FUWD013224928
[FUWD] metagenome; unknown
237
324
+
Ser
GGA
[ENA]
¢þ
>SRA1035087
SRR035089.235600
454 Sequencing (SRP001810)
119
206
+
Ser
GGA
[SRA]
>SRA1040447
SRR035091.98631
454 Sequencing (SRP001812)
99
186
+
Ser
GGA
[SRA]
>SRA1040732
SRR035091.139090
454 Sequencing (SRP001812)
504
417
-
Ser
GGA
[SRA]
>SRA1050157
SRR035095.203055
454 Sequencing (SRP001816)
106
19
-
Ser
GGA
[SRA]
Identical group No.95230 (6 seq.)
>WENV170571559
FLOH01000200
[FLOH] marine metagenome; water
101331
101244
-
Ser
GGA
[ENA]
¢þ
>WENV170608105
FUWD010893920
[FUWD] metagenome; unknown
88
1
-
Ser
GGA
[ENA]
¢þ
>SRA1040740
SRR035091.141160
454 Sequencing (SRP001812)
123
36
-
Ser
GGA
[SRA]
>SRA1041871
SRR035091.307741
454 Sequencing (SRP001812)
177
90
-
Ser
GGA
[SRA]
>SRA1042717
SRR035091.435146
454 Sequencing (SRP001812)
369
282
-
Ser
GGA
[SRA]
>SRA1043552
SRR035092.137255
454 Sequencing (SRP001813)
393
306
-
Ser
GGA
[SRA]
Identical group No.98460 (2 seq.)
>WENV170604359
FUWD010389516
[FUWD] metagenome; unknown
639
553
-
Ser
GGA
[ENA]
¢þ
>SRA1042116
SRR035091.341049
454 Sequencing (SRP001812)
149
235
+
Ser
GGA
[SRA]
Identical group No.98546 (5 seq.)
>WENV170612472
FUWD012619433
[FUWD] metagenome; unknown
271
358
+
Ser
GGA
[ENA]
¢þ
>SRA1017233
SRR035082.103399
454 Sequencing (SRP001803)
304
391
+
Ser
GGA
[SRA]
>SRA1017955
SRR035082.220215
454 Sequencing (SRP001803)
147
234
+
Ser
GGA
[SRA]
>SRA1041033
SRR035091.185419
454 Sequencing (SRP001812)
189
102
-
Ser
GGA
[SRA]
>SRA1041353
SRR035091.231213
454 Sequencing (SRP001812)
272
359
+
Ser
GGA
[SRA]
Identical group No.98547 (3 seq.)
>WENV170612564
FUWD012634400
[FUWD] metagenome; unknown
250
335
+
Ser
GGA
[ENA]
¢þ
>SRA1042774
SRR035091.444408
454 Sequencing (SRP001812)
251
336
+
Ser
GGA
[SRA]
>SRA1042820
SRR035091.450708
454 Sequencing (SRP001812)
98
13
-
Ser
GGA
[SRA]
Identical group No.98617 (4 seq.)
>WENV170622856
FUWD013123915
[FUWD] metagenome; unknown
256
341
+
Ser
GGA
[ENA]
¢þ
>WENV170631074
FUWD013337462
[FUWD] metagenome; unknown
256
341
+
Ser
GGA
[ENA]
¢þ
>SRA1034116
SRR035088.493257
454 Sequencing (SRP001809)
180
95
-
Ser
GGA
[SRA]
>SRA1042887
SRR035091.461562
454 Sequencing (SRP001812)
256
171
-
Ser
GGA
[SRA]
Identical group No.101964 (1 seq.)
>SRA1041285
SRR035091.223474
454 Sequencing (SRP001812)
125
38
-
Ser
GGA
[SRA]
Identical group No.101968 (1 seq.)
>SRA1041531
SRR035091.256563
454 Sequencing (SRP001812)
239
152
-
Ser
GGA
[SRA]
Identical group No.101977 (1 seq.)
>SRA1042599
SRR035091.414369
454 Sequencing (SRP001812)
88
1
-
Ser
GGA
[SRA]
Identical group No.136931 (1 seq.)
>SRA1040365
SRR035091.85222
454 Sequencing (SRP001812)
133
47
-
Ser
GGA
[SRA]
Identical group No.136964 (1 seq.)
>SRA1041932
SRR035091.316628
454 Sequencing (SRP001812)
117
33
-
Ser
GGA
[SRA]
Identical group No.153900 (3 seq.)
>WENV170612315
FUWD012570886
[FUWD] metagenome; unknown
160
75
-
Ser
GGA
[ENA]
¢þ
>SRA1035733
SRR035089.364304
454 Sequencing (SRP001810)
160
75
-
Ser
GGA
[SRA]
>SRA1040454
SRR035091.100036
454 Sequencing (SRP001812)
104
189
+
Ser
GGA
[SRA]
Identical group No.157531 (14 seq.)
>WENV170627225
FUWD013232195
[FUWD] metagenome; unknown
2463
2380
-
Ser
GGA
[ENA]
¢þ
>WENV170633216
FUWD013392865
[FUWD] metagenome; unknown
2463
2380
-
Ser
GGA
[ENA]
¢þ
>SRA1019271
SRR035082.426520
454 Sequencing (SRP001803)
85
168
+
Ser
GGA
[SRA]
>SRA1031812
SRR035087.493865
454 Sequencing (SRP001808)
184
267
+
Ser
GGA
[SRA]
>SRA1040045
SRR035091.25550
454 Sequencing (SRP001812)
72
155
+
Ser
GGA
[SRA]
>SRA1041086
SRR035091.194569
454 Sequencing (SRP001812)
429
346
-
Ser
GGA
[SRA]
>SRA1041534
SRR035091.257141
454 Sequencing (SRP001812)
25
108
+
Ser
GGA
[SRA]
>SRA1041967
SRR035091.320816
454 Sequencing (SRP001812)
241
158
-
Ser
GGA
[SRA]
>SRA1042959
SRR035092.3271
454 Sequencing (SRP001813)
111
28
-
Ser
GGA
[SRA]
>SRA1043475
SRR035092.121448
454 Sequencing (SRP001813)
186
269
+
Ser
GGA
[SRA]
>SRA1043784
SRR035092.174789
454 Sequencing (SRP001813)
334
251
-
Ser
GGA
[SRA]
>SRA1044779
SRR035092.341725
454 Sequencing (SRP001813)
335
252
-
Ser
GGA
[SRA]
>SRA1049161
SRR035095.30498
454 Sequencing (SRP001816)
243
326
+
Ser
GGA
[SRA]
>SRA1050670
SRR035095.319896
454 Sequencing (SRP001816)
101
184
+
Ser
GGA
[SRA]
Identical group No.165730 (8 seq.)
>WENV170611702
FUWD012377980
[FUWD] metagenome; unknown
327
242
-
Ser
GGA
[ENA]
¢þ
>WENV170620844
FUWD013041032
[FUWD] metagenome; unknown
847
764
-
Ser
GGA
[ENA]
¢þ
>WENV170628999
FUWD013258122
[FUWD] metagenome; unknown
847
764
-
Ser
GGA
[ENA]
¢þ
>SRA1033375
SRR035088.238270
454 Sequencing (SRP001809)
289
206
-
Ser
GGA
[SRA]
>SRA1038630
SRR035090.339386
454 Sequencing (SRP001811)
193
278
+
Ser
GGA
[SRA]
>SRA1041330
SRR035091.228416
454 Sequencing (SRP001812)
295
378
+
Ser
GGA
[SRA]
>SRA1042498
SRR035091.397804
454 Sequencing (SRP001812)
376
293
-
Ser
GGA
[SRA]
>SRA1048115
SRR035094.112207
454 Sequencing (SRP001815)
360
277
-
Ser
GGA
[SRA]
Identical group No.165740 (2 seq.)
>WENV170612256
FUWD012556074
[FUWD] metagenome; unknown
105
20
-
Ser
GGA
[ENA]
¢þ
>SRA1040978
SRR035091.176783
454 Sequencing (SRP001812)
143
58
-
Ser
GGA
[SRA]
Identical group No.165809 (3 seq.)
>WENV170623039
FUWD013133888
[FUWD] metagenome; unknown
133
48
-
Ser
GGA
[ENA]
¢þ
>WENV170631273
FUWD013346934
[FUWD] metagenome; unknown
133
48
-
Ser
GGA
[ENA]
¢þ
>SRA1042590
SRR035091.413159
454 Sequencing (SRP001812)
368
283
-
Ser
GGA
[SRA]
Identical group No.169159 (1 seq.)
>SRA1040576
SRR035091.117629
454 Sequencing (SRP001812)
473
390
-
Ser
GGA
[SRA]
Identical group No.169187 (1 seq.)
>SRA1040250
SRR035091.65632
454 Sequencing (SRP001812)
349
264
-
Ser
GGA
[SRA]
Identical group No.224219 (1 seq.)
>SRA1041508
SRR035091.252838
454 Sequencing (SRP001812)
101
181
+
Ser
GGA
[SRA]
Identical group No.224224 (1 seq.)
>SRA1042365
SRR035091.378534
454 Sequencing (SRP001812)
342
262
-
Ser
GGA
[SRA]
Identical group No.230986 (1 seq.)
>SRA1041822
SRR035091.299662
454 Sequencing (SRP001812)
394
476
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK