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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTA
HIT:
46 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10539 (1 seq.)
>SRA1040295
SRR035091.73546
454 Sequencing (SRP001812)
154
59
-
Tyr
GTA
[SRA]
Identical group No.81149 (2 seq.)
>SRA1040337
SRR035091.80774
454 Sequencing (SRP001812)
107
195
+
Tyr
GTA
[SRA]
>SRA1040871
SRR035091.162036
454 Sequencing (SRP001812)
107
195
+
Tyr
GTA
[SRA]
Identical group No.118304 (3 seq.)
>WENV170611985
FUWD012476584
[FUWD] metagenome; unknown
408
324
-
Tyr
GTA
[ENA]
¢þ
>SRA1029587
SRR035087.149483
454 Sequencing (SRP001808)
408
324
-
Tyr
GTA
[SRA]
>SRA1041243
SRR035091.219923
454 Sequencing (SRP001812)
466
382
-
Tyr
GTA
[SRA]
Identical group No.131761 (3 seq.)
>WENV170619090
FUWD012999189
[FUWD] metagenome; unknown
7
91
+
Tyr
GTA
[ENA]
¢þ
>SRA1041669
SRR035091.277174
454 Sequencing (SRP001812)
32
116
+
Tyr
GTA
[SRA]
>SRA1048783
SRR035094.247803
454 Sequencing (SRP001815)
529
445
-
Tyr
GTA
[SRA]
Identical group No.153841 (5 seq.)
>WENV170622254
FUWD013094317
[FUWD] metagenome; unknown
180
265
+
Tyr
GTA
[ENA]
¢þ
>WENV170630475
FUWD013309054
[FUWD] metagenome; unknown
180
265
+
Tyr
GTA
[ENA]
¢þ
>SRA1025594
SRR035085.44480
454 Sequencing (SRP001806)
193
278
+
Tyr
GTA
[SRA]
>SRA1040897
SRR035091.165183
454 Sequencing (SRP001812)
134
219
+
Tyr
GTA
[SRA]
>SRA1041295
SRR035091.224436
454 Sequencing (SRP001812)
133
218
+
Tyr
GTA
[SRA]
Identical group No.153895 (6 seq.)
>WENV170601383
FUWD010170107
[FUWD] metagenome; unknown
406
321
-
Tyr
GTA
[ENA]
¢þ
>SRA1032926
SRR035088.130651
454 Sequencing (SRP001809)
264
179
-
Tyr
GTA
[SRA]
>SRA1035446
SRR035089.306261
454 Sequencing (SRP001810)
396
311
-
Tyr
GTA
[SRA]
>SRA1036007
SRR035089.425576
454 Sequencing (SRP001810)
398
313
-
Tyr
GTA
[SRA]
>SRA1041661
SRR035091.275556
454 Sequencing (SRP001812)
34
119
+
Tyr
GTA
[SRA]
>SRA1042446
SRR035091.387862
454 Sequencing (SRP001812)
113
198
+
Tyr
GTA
[SRA]
Identical group No.153911 (2 seq.)
>SRA1036162
SRR035089.459488
454 Sequencing (SRP001810)
308
391
+
Tyr
GTA
[SRA]
>SRA1041898
SRR035091.313087
454 Sequencing (SRP001812)
169
252
+
Tyr
GTA
[SRA]
Identical group No.153922 (3 seq.)
>WENV170600892
FUWD010146648
[FUWD] metagenome; unknown
251
336
+
Tyr
GTA
[ENA]
¢þ
>SRA1036729
SRR035089.596324
454 Sequencing (SRP001810)
101
16
-
Tyr
GTA
[SRA]
>SRA1041271
SRR035091.221935
454 Sequencing (SRP001812)
251
336
+
Tyr
GTA
[SRA]
Identical group No.165623 (6 seq.)
>WENV170600493
FUWD010129541
[FUWD] metagenome; unknown
463
378
-
Tyr
GTA
[ENA]
¢þ
>WENV170626171
FUWD013215719
[FUWD] metagenome; unknown
286
201
-
Tyr
GTA
[ENA]
¢þ
>SRA1041731
SRR035091.283847
454 Sequencing (SRP001812)
392
307
-
Tyr
GTA
[SRA]
>SRA1041916
SRR035091.315427
454 Sequencing (SRP001812)
432
347
-
Tyr
GTA
[SRA]
>SRA1043519
SRR035092.130613
454 Sequencing (SRP001813)
129
44
-
Tyr
GTA
[SRA]
>SRA1044100
SRR035092.224350
454 Sequencing (SRP001813)
129
44
-
Tyr
GTA
[SRA]
Identical group No.165738 (2 seq.)
>WENV170612223
FUWD012541201
[FUWD] metagenome; unknown
159
76
-
Tyr
GTA
[ENA]
¢þ
>SRA1041726
SRR035091.283612
454 Sequencing (SRP001812)
451
368
-
Tyr
GTA
[SRA]
Identical group No.165741 (3 seq.)
>WENV170612442
FUWD012612377
[FUWD] metagenome; unknown
267
184
-
Tyr
GTA
[ENA]
¢þ
>SRA1040811
SRR035091.153190
454 Sequencing (SRP001812)
267
184
-
Tyr
GTA
[SRA]
>SRA1041902
SRR035091.313543
454 Sequencing (SRP001812)
331
248
-
Tyr
GTA
[SRA]
Identical group No.165757 (2 seq.)
>WENV170613114
FUWD012781001
[FUWD] metagenome; unknown
697
782
+
Tyr
GTA
[ENA]
¢þ
>SRA1042566
SRR035091.409513
454 Sequencing (SRP001812)
72
157
+
Tyr
GTA
[SRA]
Identical group No.169155 (1 seq.)
>SRA1040201
SRR035091.57406
454 Sequencing (SRP001812)
301
384
+
Tyr
GTA
[SRA]
Identical group No.169156 (1 seq.)
>SRA1040246
SRR035091.64698
454 Sequencing (SRP001812)
135
50
-
Tyr
GTA
[SRA]
Identical group No.169164 (2 seq.)
>SRA1040805
SRR035091.152725
454 Sequencing (SRP001812)
338
255
-
Tyr
GTA
[SRA]
>SRA1041157
SRR035091.207162
454 Sequencing (SRP001812)
339
256
-
Tyr
GTA
[SRA]
Identical group No.169170 (1 seq.)
>SRA1041698
SRR035091.280207
454 Sequencing (SRP001812)
431
346
-
Tyr
GTA
[SRA]
Identical group No.169176 (1 seq.)
>SRA1042511
SRR035091.400329
454 Sequencing (SRP001812)
18
101
+
Tyr
GTA
[SRA]
Identical group No.180214 (13 seq.)
>WENV170626765
FUWD013229349
[FUWD] metagenome; unknown
3653
3735
+
Tyr
GTA
[ENA]
¢þ
>WENV170632644
FUWD013385546
[FUWD] metagenome; unknown
7485
7567
+
Tyr
GTA
[ENA]
¢þ
>SRA1019383
SRR035082.446037
454 Sequencing (SRP001803)
158
76
-
Tyr
GTA
[SRA]
>SRA1026531
SRR035085.222530
454 Sequencing (SRP001806)
135
217
+
Tyr
GTA
[SRA]
>SRA1029821
SRR035087.187542
454 Sequencing (SRP001808)
359
441
+
Tyr
GTA
[SRA]
>SRA1040176
SRR035091.53133
454 Sequencing (SRP001812)
178
96
-
Tyr
GTA
[SRA]
>SRA1041753
SRR035091.288001
454 Sequencing (SRP001812)
90
8
-
Tyr
GTA
[SRA]
>SRA1041811
SRR035091.298185
454 Sequencing (SRP001812)
248
166
-
Tyr
GTA
[SRA]
>SRA1042329
SRR035091.373354
454 Sequencing (SRP001812)
200
118
-
Tyr
GTA
[SRA]
>SRA1042370
SRR035091.378828
454 Sequencing (SRP001812)
67
149
+
Tyr
GTA
[SRA]
>SRA1042377
SRR035091.379073
454 Sequencing (SRP001812)
158
240
+
Tyr
GTA
[SRA]
>SRA1042501
SRR035091.398415
454 Sequencing (SRP001812)
332
250
-
Tyr
GTA
[SRA]
>SRA1049758
SRR035095.135359
454 Sequencing (SRP001816)
249
167
-
Tyr
GTA
[SRA]
Identical group No.186066 (9 seq.)
>WENV170603299
FUWD010299550
[FUWD] metagenome; unknown
472
556
+
Tyr
GTA
[ENA]
¢þ
>WENV170626365
FUWD013220988
[FUWD] metagenome; unknown
1011
927
-
Tyr
GTA
[ENA]
¢þ
>WENV170626367
FUWD013220989
[FUWD] metagenome; unknown
152
68
-
Tyr
GTA
[ENA]
¢þ
>SRA1029158
SRR035087.84387
454 Sequencing (SRP001808)
275
359
+
Tyr
GTA
[SRA]
>SRA1029362
SRR035087.115619
454 Sequencing (SRP001808)
328
412
+
Tyr
GTA
[SRA]
>SRA1042872
SRR035091.459633
454 Sequencing (SRP001812)
14
98
+
Tyr
GTA
[SRA]
>SRA1048221
SRR035094.130237
454 Sequencing (SRP001815)
126
210
+
Tyr
GTA
[SRA]
>SRA1049922
SRR035095.160873
454 Sequencing (SRP001816)
200
284
+
Tyr
GTA
[SRA]
>SRA1054863
SRR035099.237687
454 Sequencing (SRP001820)
215
131
-
Tyr
GTA
[SRA]
Identical group No.198186 (2 seq.)
>WENV170612245
FUWD012551548
[FUWD] metagenome; unknown
86
2
-
Tyr
GTA
[ENA]
¢þ
>SRA1040279
SRR035091.72011
454 Sequencing (SRP001812)
386
302
-
Tyr
GTA
[SRA]
Identical group No.198190 (2 seq.)
>WENV170612479
FUWD012620441
[FUWD] metagenome; unknown
141
57
-
Tyr
GTA
[ENA]
¢þ
>SRA1041446
SRR035091.242983
454 Sequencing (SRP001812)
141
57
-
Tyr
GTA
[SRA]
Identical group No.198195 (3 seq.)
>WENV170612737
FUWD012674337
[FUWD] metagenome; unknown
96
180
+
Tyr
GTA
[ENA]
¢þ
>SRA1040108
SRR035091.40281
454 Sequencing (SRP001812)
227
311
+
Tyr
GTA
[SRA]
>SRA1048181
SRR035094.123663
454 Sequencing (SRP001815)
106
190
+
Tyr
GTA
[SRA]
Identical group No.198221 (2 seq.)
>WENV170613471
FUWD012807336
[FUWD] metagenome; unknown
456
372
-
Tyr
GTA
[ENA]
¢þ
>SRA1040492
SRR035091.105430
454 Sequencing (SRP001812)
442
526
+
Tyr
GTA
[SRA]
Identical group No.202994 (1 seq.)
>SRA1040276
SRR035091.71394
454 Sequencing (SRP001812)
383
299
-
Tyr
GTA
[SRA]
Identical group No.203001 (2 seq.)
>SRA1040614
SRR035091.122596
454 Sequencing (SRP001812)
120
36
-
Tyr
GTA
[SRA]
>SRA1042171
SRR035091.349521
454 Sequencing (SRP001812)
83
1
-
Tyr
GTA
[SRA]
Identical group No.203003 (2 seq.)
>SRA1040748
SRR035091.142395
454 Sequencing (SRP001812)
317
402
+
Tyr
GTA
[SRA]
>SRA1040763
SRR035091.144093
454 Sequencing (SRP001812)
313
398
+
Tyr
GTA
[SRA]
Identical group No.203016 (1 seq.)
>SRA1041920
SRR035091.315741
454 Sequencing (SRP001812)
479
395
-
Tyr
GTA
[SRA]
Identical group No.203018 (1 seq.)
>SRA1042133
SRR035091.343827
454 Sequencing (SRP001812)
262
346
+
Tyr
GTA
[SRA]
Identical group No.203022 (1 seq.)
>SRA1042518
SRR035091.400940
454 Sequencing (SRP001812)
286
202
-
Tyr
GTA
[SRA]
Identical group No.203025 (1 seq.)
>SRA1042681
SRR035091.428893
454 Sequencing (SRP001812)
210
292
+
Tyr
GTA
[SRA]
Identical group No.203026 (1 seq.)
>SRA1042687
SRR035091.429650
454 Sequencing (SRP001812)
274
193
-
Tyr
GTA
[SRA]
Identical group No.203028 (1 seq.)
>SRA1040843
SRR035091.158778
454 Sequencing (SRP001812)
239
323
+
Tyr
GTA
[SRA]
Identical group No.203029 (1 seq.)
>SRA1042644
SRR035091.422984
454 Sequencing (SRP001812)
206
122
-
Tyr
GTA
[SRA]
Identical group No.219632 (4 seq.)
>WENV170608140
FUWD010896028
[FUWD] metagenome; unknown
411
328
-
Tyr
GTA
[ENA]
¢þ
>SRA1029597
SRR035087.149998
454 Sequencing (SRP001808)
399
481
+
Tyr
GTA
[SRA]
>SRA1041843
SRR035091.303834
454 Sequencing (SRP001812)
414
330
-
Tyr
GTA
[SRA]
>SRA1043188
SRR035092.66466
454 Sequencing (SRP001813)
385
302
-
Tyr
GTA
[SRA]
Identical group No.219665 (4 seq.)
>WENV170622522
FUWD013107813
[FUWD] metagenome; unknown
14
97
+
Tyr
GTA
[ENA]
¢þ
>WENV170630746
FUWD013322083
[FUWD] metagenome; unknown
14
97
+
Tyr
GTA
[ENA]
¢þ
>SRA1041390
SRR035091.236220
454 Sequencing (SRP001812)
214
131
-
Tyr
GTA
[SRA]
>SRA1045822
SRR035093.177521
454 Sequencing (SRP001814)
275
192
-
Tyr
GTA
[SRA]
Identical group No.224213 (1 seq.)
>SRA1039985
SRR035091.9720
454 Sequencing (SRP001812)
89
170
+
Tyr
GTA
[SRA]
Identical group No.358345 (3 seq.)
>WENV170612412
FUWD012605426
[FUWD] metagenome; unknown
262
188
-
Tyr
GTA
[ENA]
¢þ
>SRA1040323
SRR035091.78844
454 Sequencing (SRP001812)
414
340
-
Tyr
GTA
[SRA]
>SRA1043847
SRR035092.185320
454 Sequencing (SRP001813)
262
188
-
Tyr
GTA
[SRA]
Identical group No.573551 (1 seq.)
>SRA1040969
SRR035091.175559
454 Sequencing (SRP001812)
243
318
+
Tyr
GTA
[SRA]
Identical group No.672795 (4 seq.)
>WENV170612485
FUWD012621509
[FUWD] metagenome; unknown
125
196
+
Tyr
GTA
[ENA]
¢þ
>SRA1022577
SRR035083.427548
454 Sequencing (SRP001804)
297
226
-
Tyr
GTA
[SRA]
>SRA1030577
SRR035087.299070
454 Sequencing (SRP001808)
121
192
+
Tyr
GTA
[SRA]
>SRA1041527
SRR035091.255934
454 Sequencing (SRP001812)
125
196
+
Tyr
GTA
[SRA]
Identical group No.711052 (3 seq.)
>WENV170611810
FUWD012402914
[FUWD] metagenome; unknown
265
191
-
Tyr
GTA
[ENA]
¢þ
>SRA1024718
SRR035084.384214
454 Sequencing (SRP001805)
265
191
-
Tyr
GTA
[SRA]
>SRA1040391
SRR035091.89367
454 Sequencing (SRP001812)
19
93
+
Tyr
GTA
[SRA]
Identical group No.726949 (3 seq.)
>SRA1040074
SRR035091.33232
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
>SRA1040232
SRR035091.63904
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
>SRA1040770
SRR035091.145933
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
Identical group No.726979 (1 seq.)
>SRA1040432
SRR035091.96685
454 Sequencing (SRP001812)
163
91
-
Tyr
GTA
[SRA]
Identical group No.727058 (1 seq.)
>SRA1041277
SRR035091.222099
454 Sequencing (SRP001812)
274
345
+
Tyr
GTA
[SRA]
Identical group No.804988 (3 seq.)
>WENV170603347
FUWD010303777
[FUWD] metagenome; unknown
362
292
-
Tyr
GTA
[ENA]
¢þ
>SRA1037023
SRR035090.60519
454 Sequencing (SRP001811)
111
41
-
Tyr
GTA
[SRA]
>SRA1042375
SRR035091.379048
454 Sequencing (SRP001812)
180
250
+
Tyr
GTA
[SRA]
Identical group No.812790 (3 seq.)
>WENV170215228
CEPX01136755
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
270
198
-
Tyr
GTA
[ENA]
¢þ
>SRA1019761
SRR035082.522283
454 Sequencing (SRP001803)
120
48
-
Tyr
GTA
[SRA]
>SRA1042510
SRR035091.400303
454 Sequencing (SRP001812)
320
248
-
Tyr
GTA
[SRA]
Identical group No.812791 (1 seq.)
>SRA1042542
SRR035091.405596
454 Sequencing (SRP001812)
292
362
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK