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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = CGA
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6083 (6 seq.)
>WENV170622842
FUWD013123298
[FUWD] metagenome; unknown
339
433
+
Ser
CGA
[ENA]
¢þ
>WENV170631060
FUWD013336852
[FUWD] metagenome; unknown
339
433
+
Ser
CGA
[ENA]
¢þ
>SRA1029627
SRR035087.153415
454 Sequencing (SRP001808)
339
433
+
Ser
CGA
[SRA]
>SRA1040659
SRR035091.128896
454 Sequencing (SRP001812)
187
93
-
Ser
CGA
[SRA]
>SRA1041692
SRR035091.279502
454 Sequencing (SRP001812)
187
93
-
Ser
CGA
[SRA]
>SRA1043914
SRR035092.193060
454 Sequencing (SRP001813)
226
320
+
Ser
CGA
[SRA]
Identical group No.25443 (1 seq.)
>SRA1043007
SRR035092.19867
454 Sequencing (SRP001813)
76
167
+
Ser
CGA
[SRA]
Identical group No.25445 (2 seq.)
>SRA1021064
SRR035083.204634
454 Sequencing (SRP001804)
176
267
+
Ser
CGA
[SRA]
>SRA1043757
SRR035092.171305
454 Sequencing (SRP001813)
182
273
+
Ser
CGA
[SRA]
Identical group No.30421 (5 seq.)
>WENV170626610
FUWD013226691
[FUWD] metagenome; unknown
188
98
-
Ser
CGA
[ENA]
¢þ
>WENV170634206
FUWD013412153
[FUWD] metagenome; unknown
5321
5411
+
Ser
CGA
[ENA]
¢þ
>SRA1034738
SRR035089.163527
454 Sequencing (SRP001810)
288
198
-
Ser
CGA
[SRA]
>SRA1044969
SRR035092.381857
454 Sequencing (SRP001813)
88
178
+
Ser
CGA
[SRA]
>SRA1049889
SRR035095.154743
454 Sequencing (SRP001816)
82
172
+
Ser
CGA
[SRA]
Identical group No.37801 (2 seq.)
>WENV170613437
FUWD012804271
[FUWD] metagenome; unknown
203
114
-
Ser
CGA
[ENA]
¢þ
>SRA1043840
SRR035092.184729
454 Sequencing (SRP001813)
282
371
+
Ser
CGA
[SRA]
Identical group No.38959 (1 seq.)
>SRA1043075
SRR035092.37514
454 Sequencing (SRP001813)
228
138
-
Ser
CGA
[SRA]
Identical group No.38977 (1 seq.)
>SRA1043334
SRR035092.97934
454 Sequencing (SRP001813)
2
92
+
Ser
CGA
[SRA]
Identical group No.47791 (50 seq.)
>WENV180208864
OBAJ01072789
[OBAJ] marine metagenome; Coastal water
359
270
-
Ser
CGA
[ENA]
¢þ
>WENV180209121
OBAK01019644
[OBAK] marine metagenome; ENVO.00002150
297
208
-
Ser
CGA
[ENA]
¢þ
>WENV180209620
OBAL01007670
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
358
447
+
Ser
CGA
[ENA]
¢þ
>WENV180360998
OBNU01080527
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
40
129
+
Ser
CGA
[ENA]
¢þ
>WENV180368369
OBOF01071566
[OBOF] marine metagenome; ENVO:00002010
223
312
+
Ser
CGA
[ENA]
¢þ
>WENV180370038
OBOH01022043
[OBOH] marine metagenome; ENVO:00002010
713
624
-
Ser
CGA
[ENA]
¢þ
>WENV180376815
OBOM01101533
[OBOM] marine metagenome; Seawater
25
114
+
Ser
CGA
[ENA]
¢þ
>WENV180391432
OBPN01001191
[OBPN] marine metagenome; seawater
876
787
-
Ser
CGA
[ENA]
¢þ
>WENV180395604
OBPT01053577
[OBPT] marine metagenome; ENVO:00002010 seawater
230
141
-
Ser
CGA
[ENA]
¢þ
>WENV180398837
OBQB01002896
[OBQB] marine metagenome; ENVO.00002150
308
397
+
Ser
CGA
[ENA]
¢þ
>WENV180399287
OBQH01000432
[OBQH] marine metagenome; ENV:00002010
1036
1125
+
Ser
CGA
[ENA]
¢þ
>WENV180399482
OBQO01000002
[OBQO] marine metagenome; ENVO:00002010
40862
40951
+
Ser
CGA
[ENA]
¢þ
>WENV180594017
OCOY01010845
[OCOY] marine metagenome; ENVO:00002010
423
512
+
Ser
CGA
[ENA]
¢þ
>WENV181120455
OEFK01001514
[OEFK] marine metagenome; ENVO:00002010 seawater
1126
1037
-
Ser
CGA
[ENA]
¢þ
>WENV181322642
OFKT01008609
[OFKT] marine metagenome; sea ice
576
665
+
Ser
CGA
[ENA]
¢þ
>WENV181323567
OFKY01007800
[OFKY] marine metagenome; sea ice
657
746
+
Ser
CGA
[ENA]
¢þ
>WENV181324128
OFLC01000219
[OFLC] marine metagenome; melt pond
2784
2873
+
Ser
CGA
[ENA]
¢þ
>WENV181324514
OFLF01000286
[OFLF] marine metagenome; melt pond
1082
993
-
Ser
CGA
[ENA]
¢þ
>WENV181325777
OFLJ01025293
[OFLJ] seawater metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¢þ
>WENV181391453
OFRT01008549
[OFRT] seawater metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¢þ
>WENV181839659
OGVO01005753
[OGVO] freshwater metagenome; freshwater
991
902
-
Ser
CGA
[ENA]
¢þ
>WENV183615721
OOEB01110046
[OOEB] marine metagenome; sea ice
186
275
+
Ser
CGA
[ENA]
¢þ
>WENV183618959
OOFP01008538
[OOFP] marine metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¢þ
>WENV183619631
OOFQ01025781
[OOFQ] marine metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¢þ
>WENV183620902
OOFT01000015
[OOFT] marine metagenome; sea ice
31409
31320
-
Ser
CGA
[ENA]
¢þ
>WENV183622922
OOFW01049545
[OOFW] marine metagenome; sea ice
288
377
+
Ser
CGA
[ENA]
¢þ
>WENV183627768
OOGL01042281
[OOGL] marine metagenome; sea ice
414
503
+
Ser
CGA
[ENA]
¢þ
>WENV170568054
FLMP01014636
[FLMP] seawater metagenome; seawater
736
647
-
Ser
CGA
[ENA]
¢þ
>WENV170598416
FUWD010034788
[FUWD] metagenome; unknown
364
453
+
Ser
CGA
[ENA]
¢þ
>WENV170622386
FUWD013101333
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¢þ
>WENV170627069
FUWD013231034
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¢þ
>WENV170627613
FUWD013234090
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¢þ
>WENV170630610
FUWD013315750
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¢þ
>WENV170949620
MEHZ011438101
[MEHZ] marine metagenome; marine surface water
392
481
+
Ser
CGA
[ENA]
¢þ
>SRA1023313
SRR035084.71422
454 Sequencing (SRP001805)
94
5
-
Ser
CGA
[SRA]
>SRA1024335
SRR035084.301604
454 Sequencing (SRP001805)
261
350
+
Ser
CGA
[SRA]
>SRA1024843
SRR035084.418158
454 Sequencing (SRP001805)
39
128
+
Ser
CGA
[SRA]
>SRA1024846
SRR035084.419560
454 Sequencing (SRP001805)
90
179
+
Ser
CGA
[SRA]
>SRA1025356
SRR035084.562500
454 Sequencing (SRP001805)
144
55
-
Ser
CGA
[SRA]
>SRA1038141
SRR035090.253574
454 Sequencing (SRP001811)
178
89
-
Ser
CGA
[SRA]
>SRA1044703
SRR035092.325126
454 Sequencing (SRP001813)
89
178
+
Ser
CGA
[SRA]
>SRA1045243
SRR035093.40477
454 Sequencing (SRP001814)
93
182
+
Ser
CGA
[SRA]
>SRA1047219
SRR035093.485716
454 Sequencing (SRP001814)
81
170
+
Ser
CGA
[SRA]
>SRA1047384
SRR035093.528774
454 Sequencing (SRP001814)
30
119
+
Ser
CGA
[SRA]
>SRA1047576
SRR035093.584987
454 Sequencing (SRP001814)
122
211
+
Ser
CGA
[SRA]
>WENV038599
AACY021946791
Marine microbial communities from Global Ocean Sampling (GOS)
571
480
-
Ser
CGA
[ENA]
>WENV047254
AACY022650676
Marine microbial communities from Global Ocean Sampling (GOS)
151
242
+
Ser
CGA
[ENA]
>W121063460
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
232283
232372
+
Ser
CGA
[ENA]
¡û
>W1610625742
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
>W1710756869
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
Identical group No.57986 (3 seq.)
>WENV170612598
FUWD012643187
[FUWD] metagenome; unknown
182
270
+
Ser
CGA
[ENA]
¢þ
>SRA1043449
SRR035092.117094
454 Sequencing (SRP001813)
213
301
+
Ser
CGA
[SRA]
>SRA1048832
SRR035094.259246
454 Sequencing (SRP001815)
196
108
-
Ser
CGA
[SRA]
Identical group No.60054 (1 seq.)
>SRA1043461
SRR035092.119470
454 Sequencing (SRP001813)
69
158
+
Ser
CGA
[SRA]
Identical group No.60058 (1 seq.)
>SRA1044025
SRR035092.211048
454 Sequencing (SRP001813)
17
106
+
Ser
CGA
[SRA]
Identical group No.60062 (1 seq.)
>SRA1044199
SRR035092.239660
454 Sequencing (SRP001813)
279
366
+
Ser
CGA
[SRA]
Identical group No.60065 (1 seq.)
>SRA1044548
SRR035092.298409
454 Sequencing (SRP001813)
486
573
+
Ser
CGA
[SRA]
Identical group No.60068 (1 seq.)
>SRA1044923
SRR035092.373468
454 Sequencing (SRP001813)
119
30
-
Ser
CGA
[SRA]
Identical group No.79203 (2 seq.)
>WENV170597737
FUWD010012838
[FUWD] metagenome; unknown
92
4
-
Ser
CGA
[ENA]
¢þ
>SRA1044903
SRR035092.370597
454 Sequencing (SRP001813)
146
234
+
Ser
CGA
[SRA]
Identical group No.79237 (5 seq.)
>WENV170608133
FUWD010895771
[FUWD] metagenome; unknown
630
542
-
Ser
CGA
[ENA]
¢þ
>SRA1016701
SRR035082.7956
454 Sequencing (SRP001803)
305
217
-
Ser
CGA
[SRA]
>SRA1019578
SRR035082.480860
454 Sequencing (SRP001803)
284
196
-
Ser
CGA
[SRA]
>SRA1044061
SRR035092.216877
454 Sequencing (SRP001813)
55
143
+
Ser
CGA
[SRA]
>SRA1045038
SRR035092.397880
454 Sequencing (SRP001813)
54
142
+
Ser
CGA
[SRA]
Identical group No.79257 (4 seq.)
>WENV170612675
FUWD012656162
[FUWD] metagenome; unknown
145
57
-
Ser
CGA
[ENA]
¢þ
>SRA1044834
SRR035092.353517
454 Sequencing (SRP001813)
145
57
-
Ser
CGA
[SRA]
>SRA1049139
SRR035095.26992
454 Sequencing (SRP001816)
241
153
-
Ser
CGA
[SRA]
>SRA1049249
SRR035095.44460
454 Sequencing (SRP001816)
243
155
-
Ser
CGA
[SRA]
Identical group No.80336 (1 seq.)
>SRA1045075
SRR035092.406341
454 Sequencing (SRP001813)
57
143
+
Ser
CGA
[SRA]
Identical group No.87068 (10 seq.)
>WENV170627300
FUWD013232509
[FUWD] metagenome; unknown
5509
5422
-
Ser
CGA
[ENA]
¢þ
>SRA1030661
SRR035087.310930
454 Sequencing (SRP001808)
111
24
-
Ser
CGA
[SRA]
>SRA1034025
SRR035088.451778
454 Sequencing (SRP001809)
310
223
-
Ser
CGA
[SRA]
>SRA1035115
SRR035089.240303
454 Sequencing (SRP001810)
127
40
-
Ser
CGA
[SRA]
>SRA1040451
SRR035091.99602
454 Sequencing (SRP001812)
94
7
-
Ser
CGA
[SRA]
>SRA1041823
SRR035091.299683
454 Sequencing (SRP001812)
157
70
-
Ser
CGA
[SRA]
>SRA1042749
SRR035091.440409
454 Sequencing (SRP001812)
456
369
-
Ser
CGA
[SRA]
>SRA1043587
SRR035092.142745
454 Sequencing (SRP001813)
152
239
+
Ser
CGA
[SRA]
>SRA1043715
SRR035092.164413
454 Sequencing (SRP001813)
467
380
-
Ser
CGA
[SRA]
>SRA1049710
SRR035095.123259
454 Sequencing (SRP001816)
526
439
-
Ser
CGA
[SRA]
Identical group No.87097 (3 seq.)
>WENV170598485
FUWD010036982
[FUWD] metagenome; unknown
900
813
-
Ser
CGA
[ENA]
¢þ
>SRA1036295
SRR035089.489354
454 Sequencing (SRP001810)
222
135
-
Ser
CGA
[SRA]
>SRA1044616
SRR035092.310173
454 Sequencing (SRP001813)
361
274
-
Ser
CGA
[SRA]
Identical group No.98431 (4 seq.)
>WENV170601374
FUWD010169248
[FUWD] metagenome; unknown
749
662
-
Ser
CGA
[ENA]
¢þ
>SRA1017423
SRR035082.137063
454 Sequencing (SRP001803)
430
343
-
Ser
CGA
[SRA]
>SRA1043582
SRR035092.141737
454 Sequencing (SRP001813)
346
433
+
Ser
CGA
[SRA]
>SRA1048179
SRR035094.123466
454 Sequencing (SRP001815)
101
188
+
Ser
CGA
[SRA]
Identical group No.100529 (1 seq.)
>SRA1043385
SRR035092.106267
454 Sequencing (SRP001813)
218
303
+
Ser
CGA
[SRA]
Identical group No.100534 (1 seq.)
>SRA1043932
SRR035092.196539
454 Sequencing (SRP001813)
297
210
-
Ser
CGA
[SRA]
Identical group No.100582 (1 seq.)
>SRA1045036
SRR035092.397775
454 Sequencing (SRP001813)
157
245
+
Ser
CGA
[SRA]
Identical group No.131834 (4 seq.)
>WENV170625546
FUWD013200122
[FUWD] metagenome; unknown
2287
2373
+
Ser
CGA
[ENA]
¢þ
>WENV170633773
FUWD013402440
[FUWD] metagenome; unknown
2287
2373
+
Ser
CGA
[ENA]
¢þ
>SRA1040144
SRR035091.47837
454 Sequencing (SRP001812)
153
239
+
Ser
CGA
[SRA]
>SRA1043252
SRR035092.82589
454 Sequencing (SRP001813)
136
50
-
Ser
CGA
[SRA]
Identical group No.153850 (5 seq.)
>WENV170612628
FUWD012647709
[FUWD] metagenome; unknown
210
125
-
Ser
CGA
[ENA]
¢þ
>SRA1025875
SRR035085.100213
454 Sequencing (SRP001806)
318
233
-
Ser
CGA
[SRA]
>SRA1042615
SRR035091.416982
454 Sequencing (SRP001812)
118
33
-
Ser
CGA
[SRA]
>SRA1043857
SRR035092.186801
454 Sequencing (SRP001813)
210
125
-
Ser
CGA
[SRA]
>SRA1048955
SRR035094.296413
454 Sequencing (SRP001815)
114
199
+
Ser
CGA
[SRA]
Identical group No.222837 (6 seq.)
>WENV170608170
FUWD010898580
[FUWD] metagenome; unknown
100
184
+
Ser
CGA
[ENA]
¢þ
>SRA1032984
SRR035088.144017
454 Sequencing (SRP001809)
234
150
-
Ser
CGA
[SRA]
>SRA1041302
SRR035091.225498
454 Sequencing (SRP001812)
53
137
+
Ser
CGA
[SRA]
>SRA1043574
SRR035092.140937
454 Sequencing (SRP001813)
122
206
+
Ser
CGA
[SRA]
>SRA1049194
SRR035095.35758
454 Sequencing (SRP001816)
98
182
+
Ser
CGA
[SRA]
>SRA1049697
SRR035095.121279
454 Sequencing (SRP001816)
76
160
+
Ser
CGA
[SRA]
Identical group No.223683 (1 seq.)
>SRA1044128
SRR035092.228510
454 Sequencing (SRP001813)
141
224
+
Ser
CGA
[SRA]
Identical group No.230761 (2 seq.)
>SRA1018831
SRR035082.354343
454 Sequencing (SRP001803)
130
50
-
Ser
CGA
[SRA]
>SRA1042966
SRR035092.7786
454 Sequencing (SRP001813)
10
90
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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